Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0736 and Shewana3_0737 are separated by 168 nucleotides Shewana3_0737 and Shewana3_0738 are separated by 120 nucleotides Shewana3_0738 and Shewana3_0739 are separated by 299 nucleotides
Shewana3_0736: Shewana3_0736 - ATPase domain-containing protein (RefSeq), at 855,172 to 856,803
_0736
Shewana3_0737: Shewana3_0737 - hypothetical protein (RefSeq), at 856,972 to 857,583
_0737
Shewana3_0738: Shewana3_0738 - hypothetical protein (RefSeq), at 857,704 to 857,835
_0738
Shewana3_0739: Shewana3_0739 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 858,135 to 859,724
_0739
Position (kb) 856
857
858 Strain fitness (log2 ratio) -1
0
1
2 at 855.973 kb on + strand, within Shewana3_0736 at 855.991 kb on - strand, within Shewana3_0736 at 856.289 kb on - strand, within Shewana3_0736 at 856.412 kb on - strand, within Shewana3_0736 at 856.710 kb on + strand at 856.727 kb on + strand at 856.962 kb on + strand at 857.079 kb on + strand, within Shewana3_0737 at 857.141 kb on + strand, within Shewana3_0737 at 857.184 kb on + strand, within Shewana3_0737 at 857.557 kb on + strand at 857.564 kb on + strand at 857.565 kb on - strand at 857.572 kb on - strand at 857.820 kb on - strand, within Shewana3_0738 at 857.864 kb on + strand at 858.043 kb on - strand at 858.043 kb on - strand at 858.158 kb on - strand at 858.211 kb on - strand at 858.333 kb on + strand, within Shewana3_0739 at 858.387 kb on + strand, within Shewana3_0739 at 858.447 kb on + strand, within Shewana3_0739
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 855,973 + Shewana3_0736 0.49 -0.7 855,991 - Shewana3_0736 0.50 -0.2 856,289 - Shewana3_0736 0.68 -0.4 856,412 - Shewana3_0736 0.76 -1.2 856,710 + +0.2 856,727 + -0.0 856,962 + -0.8 857,079 + Shewana3_0737 0.17 +0.2 857,141 + Shewana3_0737 0.28 +0.7 857,184 + Shewana3_0737 0.35 +0.3 857,557 + -0.1 857,564 + -0.0 857,565 - +0.4 857,572 - -0.0 857,820 - Shewana3_0738 0.88 +0.6 857,864 + +0.3 858,043 - -0.7 858,043 - -0.2 858,158 - +0.6 858,211 - -0.6 858,333 + Shewana3_0739 0.12 +1.8 858,387 + Shewana3_0739 0.16 -0.4 858,447 + Shewana3_0739 0.20 +0.1
Or see this region's nucleotide sequence