Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0728 and Shewana3_0729 are separated by 26 nucleotides Shewana3_0729 and Shewana3_0730 are separated by 56 nucleotides Shewana3_0730 and Shewana3_0731 are separated by 52 nucleotides
Shewana3_0728: Shewana3_0728 - calcineurin phosphoesterase C-terminal domain-containing protein (RefSeq), at 844,152 to 844,991
_0728
Shewana3_0729: Shewana3_0729 - hypothetical protein (RefSeq), at 845,018 to 845,593
_0729
Shewana3_0730: Shewana3_0730 - DNA topoisomerase IV subunit B (RefSeq), at 845,650 to 847,536
_0730
Shewana3_0731: Shewana3_0731 - L-sorbosone dehydrogenase, putative (RefSeq), at 847,589 to 848,764
_0731
Position (kb) 845
846
847
848 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 844.685 kb on - strand, within Shewana3_0728 at 844.744 kb on - strand, within Shewana3_0728 at 844.749 kb on + strand, within Shewana3_0728 at 844.751 kb on - strand, within Shewana3_0728 at 844.756 kb on - strand, within Shewana3_0728 at 844.927 kb on + strand at 845.023 kb on + strand at 845.083 kb on + strand, within Shewana3_0729 at 845.091 kb on - strand, within Shewana3_0729 at 845.091 kb on - strand, within Shewana3_0729 at 845.276 kb on + strand, within Shewana3_0729 at 845.301 kb on + strand, within Shewana3_0729 at 845.320 kb on + strand, within Shewana3_0729 at 845.341 kb on + strand, within Shewana3_0729 at 845.470 kb on - strand, within Shewana3_0729 at 845.490 kb on + strand, within Shewana3_0729 at 847.530 kb on + strand at 847.531 kb on + strand at 847.974 kb on + strand, within Shewana3_0731 at 848.359 kb on + strand, within Shewana3_0731
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 844,685 - Shewana3_0728 0.63 -3.3 844,744 - Shewana3_0728 0.70 -3.7 844,749 + Shewana3_0728 0.71 -3.6 844,751 - Shewana3_0728 0.71 -3.3 844,756 - Shewana3_0728 0.72 -2.3 844,927 + -2.8 845,023 + -1.4 845,083 + Shewana3_0729 0.11 -0.1 845,091 - Shewana3_0729 0.13 -0.6 845,091 - Shewana3_0729 0.13 +0.1 845,276 + Shewana3_0729 0.45 -0.2 845,301 + Shewana3_0729 0.49 -0.7 845,320 + Shewana3_0729 0.52 +1.8 845,341 + Shewana3_0729 0.56 -0.3 845,470 - Shewana3_0729 0.78 -0.5 845,490 + Shewana3_0729 0.82 -0.6 847,530 + +0.6 847,531 + +0.0 847,974 + Shewana3_0731 0.33 -0.4 848,359 + Shewana3_0731 0.65 -0.3
Or see this region's nucleotide sequence