Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0728

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0726 and Shewana3_0727 overlap by 8 nucleotidesShewana3_0727 and Shewana3_0728 are separated by 15 nucleotidesShewana3_0728 and Shewana3_0729 are separated by 26 nucleotidesShewana3_0729 and Shewana3_0730 are separated by 56 nucleotides Shewana3_0726: Shewana3_0726 - nucleoside diphosphate pyrophosphatase (RefSeq), at 843,080 to 843,691 _0726 Shewana3_0727: Shewana3_0727 - hypothetical protein (RefSeq), at 843,684 to 844,136 _0727 Shewana3_0728: Shewana3_0728 - calcineurin phosphoesterase C-terminal domain-containing protein (RefSeq), at 844,152 to 844,991 _0728 Shewana3_0729: Shewana3_0729 - hypothetical protein (RefSeq), at 845,018 to 845,593 _0729 Shewana3_0730: Shewana3_0730 - DNA topoisomerase IV subunit B (RefSeq), at 845,650 to 847,536 _0730 Position (kb) 844 845Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 843.248 kb on + strand, within Shewana3_0726at 843.401 kb on + strand, within Shewana3_0726at 843.462 kb on + strand, within Shewana3_0726at 843.470 kb on - strand, within Shewana3_0726at 843.484 kb on + strand, within Shewana3_0726at 843.501 kb on - strand, within Shewana3_0726at 843.510 kb on + strand, within Shewana3_0726at 843.572 kb on + strand, within Shewana3_0726at 843.580 kb on - strand, within Shewana3_0726at 843.761 kb on + strand, within Shewana3_0727at 843.791 kb on - strand, within Shewana3_0727at 843.805 kb on + strand, within Shewana3_0727at 843.821 kb on + strand, within Shewana3_0727at 843.830 kb on + strand, within Shewana3_0727at 843.937 kb on + strand, within Shewana3_0727at 844.020 kb on + strand, within Shewana3_0727at 844.020 kb on + strand, within Shewana3_0727at 844.020 kb on + strand, within Shewana3_0727at 844.020 kb on + strand, within Shewana3_0727at 844.020 kb on + strand, within Shewana3_0727at 844.028 kb on - strand, within Shewana3_0727at 844.028 kb on - strand, within Shewana3_0727at 844.028 kb on - strand, within Shewana3_0727at 844.028 kb on - strand, within Shewana3_0727at 844.028 kb on - strand, within Shewana3_0727at 844.028 kb on - strand, within Shewana3_0727at 844.028 kb on - strand, within Shewana3_0727at 844.028 kb on - strand, within Shewana3_0727at 844.078 kb on - strand, within Shewana3_0727at 844.532 kb on + strand, within Shewana3_0728at 844.598 kb on + strand, within Shewana3_0728at 844.598 kb on + strand, within Shewana3_0728at 844.606 kb on - strand, within Shewana3_0728at 844.606 kb on - strand, within Shewana3_0728at 844.648 kb on + strand, within Shewana3_0728at 844.685 kb on - strand, within Shewana3_0728at 844.744 kb on - strand, within Shewana3_0728at 844.749 kb on + strand, within Shewana3_0728at 844.751 kb on - strand, within Shewana3_0728at 844.756 kb on - strand, within Shewana3_0728at 844.927 kb on + strandat 845.023 kb on + strandat 845.083 kb on + strand, within Shewana3_0729at 845.091 kb on - strand, within Shewana3_0729at 845.091 kb on - strand, within Shewana3_0729at 845.276 kb on + strand, within Shewana3_0729at 845.301 kb on + strand, within Shewana3_0729at 845.320 kb on + strand, within Shewana3_0729at 845.341 kb on + strand, within Shewana3_0729at 845.470 kb on - strand, within Shewana3_0729at 845.490 kb on + strand, within Shewana3_0729

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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843,248 + Shewana3_0726 0.27 +0.3
843,401 + Shewana3_0726 0.52 +0.1
843,462 + Shewana3_0726 0.62 -0.6
843,470 - Shewana3_0726 0.64 -0.8
843,484 + Shewana3_0726 0.66 +0.7
843,501 - Shewana3_0726 0.69 -1.1
843,510 + Shewana3_0726 0.70 -0.1
843,572 + Shewana3_0726 0.80 -0.9
843,580 - Shewana3_0726 0.82 -1.4
843,761 + Shewana3_0727 0.17 -0.6
843,791 - Shewana3_0727 0.24 +0.5
843,805 + Shewana3_0727 0.27 +0.7
843,821 + Shewana3_0727 0.30 -0.2
843,830 + Shewana3_0727 0.32 +0.2
843,937 + Shewana3_0727 0.56 -1.0
844,020 + Shewana3_0727 0.74 -2.8
844,020 + Shewana3_0727 0.74 -1.1
844,020 + Shewana3_0727 0.74 +0.0
844,020 + Shewana3_0727 0.74 +0.5
844,020 + Shewana3_0727 0.74 +0.6
844,028 - Shewana3_0727 0.76 +0.3
844,028 - Shewana3_0727 0.76 +0.3
844,028 - Shewana3_0727 0.76 +0.6
844,028 - Shewana3_0727 0.76 +0.6
844,028 - Shewana3_0727 0.76 +0.1
844,028 - Shewana3_0727 0.76 +0.5
844,028 - Shewana3_0727 0.76 +0.4
844,028 - Shewana3_0727 0.76 +0.9
844,078 - Shewana3_0727 0.87 -1.1
844,532 + Shewana3_0728 0.45 -3.4
844,598 + Shewana3_0728 0.53 -2.5
844,598 + Shewana3_0728 0.53 -1.7
844,606 - Shewana3_0728 0.54 -3.3
844,606 - Shewana3_0728 0.54 -2.9
844,648 + Shewana3_0728 0.59 -2.0
844,685 - Shewana3_0728 0.63 -3.3
844,744 - Shewana3_0728 0.70 -3.7
844,749 + Shewana3_0728 0.71 -3.6
844,751 - Shewana3_0728 0.71 -3.3
844,756 - Shewana3_0728 0.72 -2.3
844,927 + -2.8
845,023 + -1.4
845,083 + Shewana3_0729 0.11 -0.1
845,091 - Shewana3_0729 0.13 -0.6
845,091 - Shewana3_0729 0.13 +0.1
845,276 + Shewana3_0729 0.45 -0.2
845,301 + Shewana3_0729 0.49 -0.7
845,320 + Shewana3_0729 0.52 +1.8
845,341 + Shewana3_0729 0.56 -0.3
845,470 - Shewana3_0729 0.78 -0.5
845,490 + Shewana3_0729 0.82 -0.6

Or see this region's nucleotide sequence