Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0705 and Shewana3_0706 overlap by 17 nucleotides Shewana3_0706 and Shewana3_0707 overlap by 1 nucleotides Shewana3_0707 and thiH are separated by 0 nucleotides
Shewana3_0705: Shewana3_0705 - small GTP-binding protein (RefSeq), at 819,881 to 821,119
_0705
Shewana3_0706: Shewana3_0706 - biotin synthase (RefSeq), at 821,103 to 822,182
_0706
Shewana3_0707: Shewana3_0707 - hypothetical protein (RefSeq), at 822,182 to 822,820
_0707
Shewana3_0708: thiH - thiamine biosynthesis protein ThiH (RefSeq), at 822,821 to 824,260
thiH
Position (kb) 821
822
823 Strain fitness (log2 ratio) -2
-1
0
1
2 at 820.271 kb on - strand, within Shewana3_0705 at 820.655 kb on + strand, within Shewana3_0705 at 820.686 kb on + strand, within Shewana3_0705 at 820.700 kb on + strand, within Shewana3_0705 at 820.785 kb on - strand, within Shewana3_0705 at 820.880 kb on + strand, within Shewana3_0705 at 821.011 kb on + strand at 821.109 kb on + strand at 821.144 kb on + strand at 821.144 kb on + strand at 821.144 kb on + strand at 821.170 kb on - strand at 821.402 kb on + strand, within Shewana3_0706 at 821.402 kb on + strand, within Shewana3_0706 at 821.584 kb on - strand, within Shewana3_0706 at 821.841 kb on + strand, within Shewana3_0706 at 821.854 kb on - strand, within Shewana3_0706 at 821.877 kb on - strand, within Shewana3_0706 at 822.083 kb on + strand at 822.102 kb on + strand at 822.268 kb on + strand, within Shewana3_0707 at 822.268 kb on + strand, within Shewana3_0707 at 822.352 kb on - strand, within Shewana3_0707 at 822.352 kb on - strand, within Shewana3_0707 at 822.365 kb on - strand, within Shewana3_0707 at 822.572 kb on - strand, within Shewana3_0707 at 822.618 kb on + strand, within Shewana3_0707 at 822.630 kb on - strand, within Shewana3_0707 at 822.874 kb on + strand at 822.882 kb on - strand at 822.926 kb on - strand at 822.981 kb on - strand, within thiH at 822.981 kb on - strand, within thiH at 823.154 kb on + strand, within thiH
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 820,271 - Shewana3_0705 0.31 -0.4 820,655 + Shewana3_0705 0.62 +0.2 820,686 + Shewana3_0705 0.65 +1.1 820,700 + Shewana3_0705 0.66 +0.2 820,785 - Shewana3_0705 0.73 -0.4 820,880 + Shewana3_0705 0.81 +0.3 821,011 + -0.5 821,109 + +0.2 821,144 + +0.5 821,144 + -0.7 821,144 + +0.7 821,170 - +0.5 821,402 + Shewana3_0706 0.28 -0.6 821,402 + Shewana3_0706 0.28 +0.0 821,584 - Shewana3_0706 0.45 +0.2 821,841 + Shewana3_0706 0.68 -0.6 821,854 - Shewana3_0706 0.70 -2.4 821,877 - Shewana3_0706 0.72 +0.5 822,083 + +0.0 822,102 + +0.2 822,268 + Shewana3_0707 0.13 +0.5 822,268 + Shewana3_0707 0.13 -0.0 822,352 - Shewana3_0707 0.27 +0.4 822,352 - Shewana3_0707 0.27 +0.8 822,365 - Shewana3_0707 0.29 -0.6 822,572 - Shewana3_0707 0.61 +0.2 822,618 + Shewana3_0707 0.68 -0.1 822,630 - Shewana3_0707 0.70 +1.8 822,874 + +0.0 822,882 - +1.8 822,926 - +0.1 822,981 - thiH Shewana3_0708 0.11 -0.8 822,981 - thiH Shewana3_0708 0.11 +0.2 823,154 + thiH Shewana3_0708 0.23 +0.8
Or see this region's nucleotide sequence