Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0685 and Shewana3_0686 are separated by 80 nucleotides Shewana3_0686 and Shewana3_0687 overlap by 4 nucleotides Shewana3_0687 and Shewana3_0688 are separated by 33 nucleotides Shewana3_0688 and Shewana3_0689 are separated by 165 nucleotides
Shewana3_0685: Shewana3_0685 - TetR family transcriptional regulator (RefSeq), at 802,182 to 802,760
_0685
Shewana3_0686: Shewana3_0686 - hypothetical protein (RefSeq), at 802,841 to 803,701
_0686
Shewana3_0687: Shewana3_0687 - hypothetical protein (RefSeq), at 803,698 to 804,102
_0687
Shewana3_0688: Shewana3_0688 - hypothetical protein (RefSeq), at 804,136 to 804,576
_0688
Shewana3_0689: Shewana3_0689 - DegS serine peptidase (RefSeq), at 804,742 to 805,824
_0689
Position (kb) 803
804
805 Strain fitness (log2 ratio) -1
0
1 at 802.921 kb on - strand at 803.013 kb on + strand, within Shewana3_0686 at 803.038 kb on + strand, within Shewana3_0686 at 803.249 kb on + strand, within Shewana3_0686 at 803.465 kb on + strand, within Shewana3_0686 at 803.472 kb on + strand, within Shewana3_0686 at 803.511 kb on - strand, within Shewana3_0686 at 803.553 kb on - strand, within Shewana3_0686 at 803.602 kb on + strand, within Shewana3_0686 at 803.639 kb on + strand at 803.655 kb on + strand at 803.705 kb on + strand at 803.727 kb on + strand at 803.871 kb on - strand, within Shewana3_0687 at 803.907 kb on + strand, within Shewana3_0687 at 803.957 kb on + strand, within Shewana3_0687 at 803.965 kb on - strand, within Shewana3_0687 at 804.105 kb on - strand at 804.178 kb on + strand at 804.325 kb on - strand, within Shewana3_0688 at 804.358 kb on + strand, within Shewana3_0688 at 804.366 kb on - strand, within Shewana3_0688 at 804.505 kb on + strand, within Shewana3_0688 at 804.694 kb on + strand at 804.702 kb on - strand at 804.721 kb on + strand at 804.792 kb on - strand at 804.995 kb on - strand, within Shewana3_0689 at 805.051 kb on + strand, within Shewana3_0689 at 805.085 kb on - strand, within Shewana3_0689
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 802,921 - +0.2 803,013 + Shewana3_0686 0.20 +0.2 803,038 + Shewana3_0686 0.23 -0.7 803,249 + Shewana3_0686 0.47 +0.6 803,465 + Shewana3_0686 0.72 +0.8 803,472 + Shewana3_0686 0.73 +0.4 803,511 - Shewana3_0686 0.78 +0.5 803,553 - Shewana3_0686 0.83 -1.3 803,602 + Shewana3_0686 0.88 +0.9 803,639 + -0.1 803,655 + -0.1 803,705 + +0.5 803,727 + +0.9 803,871 - Shewana3_0687 0.43 +0.7 803,907 + Shewana3_0687 0.52 +1.0 803,957 + Shewana3_0687 0.64 +0.9 803,965 - Shewana3_0687 0.66 +0.2 804,105 - -0.8 804,178 + -0.2 804,325 - Shewana3_0688 0.43 -0.2 804,358 + Shewana3_0688 0.50 +1.2 804,366 - Shewana3_0688 0.52 +0.5 804,505 + Shewana3_0688 0.84 +0.3 804,694 + -0.0 804,702 - +0.8 804,721 + -0.2 804,792 - +0.8 804,995 - Shewana3_0689 0.23 +0.1 805,051 + Shewana3_0689 0.29 -0.3 805,085 - Shewana3_0689 0.32 -0.3
Or see this region's nucleotide sequence