Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0651 and Shewana3_0652 are separated by 558 nucleotides Shewana3_0652 and Shewana3_0653 are separated by 1 nucleotides
Shewana3_0651: Shewana3_0651 - hypothetical protein (RefSeq), at 770,524 to 770,958
_0651
Shewana3_0652: Shewana3_0652 - aspartate kinase III (RefSeq), at 771,517 to 772,872
_0652
Shewana3_0653: Shewana3_0653 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 772,874 to 773,989
_0653
Position (kb) 771
772
773 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 770.636 kb on + strand, within Shewana3_0651 at 770.646 kb on + strand, within Shewana3_0651 at 770.897 kb on + strand, within Shewana3_0651 at 770.897 kb on + strand, within Shewana3_0651 at 770.917 kb on + strand at 770.997 kb on - strand at 771.004 kb on + strand at 771.248 kb on + strand at 771.279 kb on - strand at 771.400 kb on - strand at 771.498 kb on - strand at 771.568 kb on + strand at 771.658 kb on + strand, within Shewana3_0652 at 771.744 kb on - strand, within Shewana3_0652 at 771.853 kb on - strand, within Shewana3_0652 at 771.876 kb on + strand, within Shewana3_0652 at 771.949 kb on + strand, within Shewana3_0652 at 772.180 kb on + strand, within Shewana3_0652 at 772.400 kb on - strand, within Shewana3_0652 at 772.436 kb on + strand, within Shewana3_0652 at 772.670 kb on + strand, within Shewana3_0652 at 772.732 kb on + strand, within Shewana3_0652 at 772.749 kb on - strand at 772.865 kb on - strand at 772.925 kb on + strand at 772.982 kb on - strand at 773.112 kb on + strand, within Shewana3_0653 at 773.262 kb on - strand, within Shewana3_0653 at 773.354 kb on + strand, within Shewana3_0653 at 773.355 kb on - strand, within Shewana3_0653 at 773.429 kb on + strand, within Shewana3_0653 at 773.526 kb on - strand, within Shewana3_0653 at 773.595 kb on + strand, within Shewana3_0653 at 773.733 kb on + strand, within Shewana3_0653 at 773.784 kb on - strand, within Shewana3_0653 at 773.859 kb on - strand, within Shewana3_0653
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 770,636 + Shewana3_0651 0.26 +0.2 770,646 + Shewana3_0651 0.28 -0.4 770,897 + Shewana3_0651 0.86 +0.2 770,897 + Shewana3_0651 0.86 -0.5 770,917 + -0.4 770,997 - -0.7 771,004 + +0.1 771,248 + -3.0 771,279 - -2.9 771,400 - -3.8 771,498 - -2.0 771,568 + -3.6 771,658 + Shewana3_0652 0.10 -3.5 771,744 - Shewana3_0652 0.17 -3.0 771,853 - Shewana3_0652 0.25 -2.1 771,876 + Shewana3_0652 0.26 -1.8 771,949 + Shewana3_0652 0.32 -2.5 772,180 + Shewana3_0652 0.49 -2.2 772,400 - Shewana3_0652 0.65 -4.0 772,436 + Shewana3_0652 0.68 -1.3 772,670 + Shewana3_0652 0.85 -3.0 772,732 + Shewana3_0652 0.90 -4.3 772,749 - -2.6 772,865 - -0.4 772,925 + +0.9 772,982 - +0.1 773,112 + Shewana3_0653 0.21 +0.6 773,262 - Shewana3_0653 0.35 +0.8 773,354 + Shewana3_0653 0.43 +0.5 773,355 - Shewana3_0653 0.43 +1.0 773,429 + Shewana3_0653 0.50 +0.8 773,526 - Shewana3_0653 0.58 -0.1 773,595 + Shewana3_0653 0.65 +1.2 773,733 + Shewana3_0653 0.77 -0.6 773,784 - Shewana3_0653 0.82 +0.4 773,859 - Shewana3_0653 0.88 -0.4
Or see this region's nucleotide sequence