Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0611 and astD are separated by 9 nucleotides astD and Shewana3_0613 are separated by 164 nucleotides
Shewana3_0611: Shewana3_0611 - Arginine N-succinyltransferase (EC 2.3.1.109) (from data) , at 716,221 to 717,240
_0611
Shewana3_0612: astD - succinylglutamic semialdehyde dehydrogenase (RefSeq), at 717,250 to 718,713
astD
Shewana3_0613: Shewana3_0613 - hypothetical protein (RefSeq), at 718,878 to 719,681
_0613
Position (kb)
717
718
719 Strain fitness (log2 ratio)
-2
-1
0
1 at 716.294 kb on + strand at 716.549 kb on + strand, within Shewana3_0611 at 716.549 kb on + strand, within Shewana3_0611 at 716.549 kb on + strand, within Shewana3_0611 at 716.557 kb on - strand, within Shewana3_0611 at 716.882 kb on - strand, within Shewana3_0611 at 716.905 kb on + strand, within Shewana3_0611 at 716.926 kb on + strand, within Shewana3_0611 at 716.959 kb on - strand, within Shewana3_0611 at 716.960 kb on + strand, within Shewana3_0611 at 717.173 kb on - strand at 717.634 kb on + strand, within astD at 717.642 kb on - strand, within astD at 717.669 kb on + strand, within astD at 717.676 kb on - strand, within astD at 717.838 kb on + strand, within astD at 717.838 kb on + strand, within astD at 717.971 kb on - strand, within astD at 718.041 kb on - strand, within astD at 718.074 kb on + strand, within astD at 718.074 kb on + strand, within astD at 718.095 kb on + strand, within astD at 718.143 kb on + strand, within astD at 718.169 kb on - strand, within astD at 718.169 kb on - strand, within astD at 718.325 kb on + strand, within astD at 718.447 kb on - strand, within astD at 718.972 kb on - strand, within Shewana3_0613 at 719.203 kb on + strand, within Shewana3_0613 at 719.299 kb on + strand, within Shewana3_0613 at 719.338 kb on + strand, within Shewana3_0613 at 719.366 kb on + strand, within Shewana3_0613 at 719.398 kb on - strand, within Shewana3_0613 at 719.407 kb on - strand, within Shewana3_0613 at 719.442 kb on + strand, within Shewana3_0613 at 719.456 kb on - strand, within Shewana3_0613 at 719.620 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 716,294 + -0.3 716,549 + Shewana3_0611 0.32 +0.4 716,549 + Shewana3_0611 0.32 +0.0 716,549 + Shewana3_0611 0.32 +0.2 716,557 - Shewana3_0611 0.33 -0.1 716,882 - Shewana3_0611 0.65 +0.7 716,905 + Shewana3_0611 0.67 -0.4 716,926 + Shewana3_0611 0.69 +0.3 716,959 - Shewana3_0611 0.72 -0.2 716,960 + Shewana3_0611 0.72 +0.6 717,173 - -0.3 717,634 + astD Shewana3_0612 0.26 -0.8 717,642 - astD Shewana3_0612 0.27 -1.5 717,669 + astD Shewana3_0612 0.29 -1.5 717,676 - astD Shewana3_0612 0.29 -0.3 717,838 + astD Shewana3_0612 0.40 -1.2 717,838 + astD Shewana3_0612 0.40 +0.3 717,971 - astD Shewana3_0612 0.49 +0.3 718,041 - astD Shewana3_0612 0.54 +0.1 718,074 + astD Shewana3_0612 0.56 -0.2 718,074 + astD Shewana3_0612 0.56 -0.2 718,095 + astD Shewana3_0612 0.58 -0.7 718,143 + astD Shewana3_0612 0.61 -1.8 718,169 - astD Shewana3_0612 0.63 +0.8 718,169 - astD Shewana3_0612 0.63 -0.5 718,325 + astD Shewana3_0612 0.73 +0.6 718,447 - astD Shewana3_0612 0.82 -0.8 718,972 - Shewana3_0613 0.12 -0.0 719,203 + Shewana3_0613 0.40 -0.4 719,299 + Shewana3_0613 0.52 -0.3 719,338 + Shewana3_0613 0.57 +0.1 719,366 + Shewana3_0613 0.61 -0.9 719,398 - Shewana3_0613 0.65 -0.9 719,407 - Shewana3_0613 0.66 +0.3 719,442 + Shewana3_0613 0.70 +0.7 719,456 - Shewana3_0613 0.72 +0.7 719,620 - -1.1
Or see this region's nucleotide sequence