Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_R0024 and Shewana3_R0025 are separated by 33 nucleotides Shewana3_R0025 and Shewana3_R0026 are separated by 123 nucleotides Shewana3_R0026 and Shewana3_R0027 are separated by 44 nucleotides Shewana3_R0027 and Shewana3_0591 are separated by 562 nucleotides Shewana3_0591 and Shewana3_0592 are separated by 244 nucleotides
Shewana3_R0024: Shewana3_R0024 - tRNA-Gly (RefSeq), at 692,697 to 692,772
_R0024
Shewana3_R0025: Shewana3_R0025 - tRNA-Gly (RefSeq), at 692,806 to 692,881
_R0025
Shewana3_R0026: Shewana3_R0026 - tRNA-Gly (RefSeq), at 693,005 to 693,080
_R0026
Shewana3_R0027: Shewana3_R0027 - tRNA-Gly (RefSeq), at 693,125 to 693,200
_R0027
Shewana3_0591: Shewana3_0591 - hypothetical protein (RefSeq), at 693,763 to 694,218
_0591
Shewana3_0592: Shewana3_0592 - carbohydrate kinase, YjeF related protein (RefSeq), at 694,463 to 695,962
_0592
Position (kb) 693
694
695 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 693.163 kb on + strand, within Shewana3_R0027 at 693.299 kb on + strand at 693.391 kb on + strand at 693.421 kb on - strand at 693.428 kb on + strand at 693.522 kb on + strand at 693.734 kb on + strand at 693.741 kb on + strand at 693.741 kb on + strand at 693.741 kb on + strand at 693.746 kb on + strand at 693.749 kb on - strand at 693.823 kb on + strand, within Shewana3_0591 at 694.021 kb on - strand, within Shewana3_0591 at 694.180 kb on + strand at 694.180 kb on + strand at 694.237 kb on + strand at 694.252 kb on + strand at 694.317 kb on + strand at 694.422 kb on - strand at 694.610 kb on - strand at 694.759 kb on - strand, within Shewana3_0592 at 694.768 kb on + strand, within Shewana3_0592 at 694.799 kb on - strand, within Shewana3_0592 at 694.946 kb on - strand, within Shewana3_0592 at 694.961 kb on - strand, within Shewana3_0592 at 694.961 kb on - strand, within Shewana3_0592 at 695.217 kb on + strand, within Shewana3_0592
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 693,163 + Shewana3_R0027 0.50 +0.9 693,299 + -0.5 693,391 + +0.7 693,421 - -0.6 693,428 + +0.0 693,522 + -0.1 693,734 + -3.1 693,741 + +0.0 693,741 + +0.3 693,741 + -0.1 693,746 + -0.8 693,749 - -0.7 693,823 + Shewana3_0591 0.13 +0.0 694,021 - Shewana3_0591 0.57 +1.2 694,180 + +0.2 694,180 + -1.8 694,237 + +0.5 694,252 + -0.2 694,317 + +0.3 694,422 - +0.1 694,610 - +0.1 694,759 - Shewana3_0592 0.20 +0.2 694,768 + Shewana3_0592 0.20 -0.3 694,799 - Shewana3_0592 0.22 -0.3 694,946 - Shewana3_0592 0.32 +0.3 694,961 - Shewana3_0592 0.33 +1.0 694,961 - Shewana3_0592 0.33 +0.4 695,217 + Shewana3_0592 0.50 -0.2
Or see this region's nucleotide sequence