Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0535 and Shewana3_0536 are separated by 4 nucleotides Shewana3_0536 and Shewana3_0537 are separated by 118 nucleotides Shewana3_0537 and Shewana3_0538 are separated by 81 nucleotides Shewana3_0538 and Shewana3_0539 are separated by 67 nucleotides
Shewana3_0535: Shewana3_0535 - major facilitator transporter (RefSeq), at 628,904 to 630,172
_0535
Shewana3_0536: Shewana3_0536 - hypothetical protein (RefSeq), at 630,177 to 631,040
_0536
Shewana3_0537: Shewana3_0537 - aspartate kinase (RefSeq), at 631,159 to 632,601
_0537
Shewana3_0538: Shewana3_0538 - hypothetical protein (RefSeq), at 632,683 to 633,102
_0538
Shewana3_0539: Shewana3_0539 - hypothetical protein (RefSeq), at 633,170 to 634,525
_0539
Position (kb) 631
632
633 Strain fitness (log2 ratio) -2
-1
0
1 at 630.185 kb on - strand at 630.269 kb on + strand, within Shewana3_0536 at 630.381 kb on - strand, within Shewana3_0536 at 630.450 kb on - strand, within Shewana3_0536 at 630.540 kb on - strand, within Shewana3_0536 at 630.763 kb on - strand, within Shewana3_0536 at 630.786 kb on - strand, within Shewana3_0536 at 630.848 kb on + strand, within Shewana3_0536 at 631.016 kb on + strand at 631.016 kb on + strand at 631.016 kb on + strand at 631.024 kb on - strand at 631.024 kb on - strand at 631.336 kb on + strand, within Shewana3_0537 at 631.344 kb on - strand, within Shewana3_0537 at 631.378 kb on - strand, within Shewana3_0537 at 631.392 kb on + strand, within Shewana3_0537 at 631.526 kb on + strand, within Shewana3_0537 at 631.534 kb on - strand, within Shewana3_0537 at 631.608 kb on + strand, within Shewana3_0537 at 631.682 kb on - strand, within Shewana3_0537 at 631.877 kb on - strand, within Shewana3_0537 at 632.000 kb on + strand, within Shewana3_0537 at 632.131 kb on + strand, within Shewana3_0537 at 632.139 kb on - strand, within Shewana3_0537 at 632.196 kb on + strand, within Shewana3_0537 at 632.196 kb on + strand, within Shewana3_0537 at 632.196 kb on + strand, within Shewana3_0537 at 632.204 kb on - strand, within Shewana3_0537 at 632.320 kb on - strand, within Shewana3_0537 at 632.320 kb on - strand, within Shewana3_0537 at 632.350 kb on - strand, within Shewana3_0537 at 632.412 kb on - strand, within Shewana3_0537 at 632.672 kb on - strand at 632.674 kb on + strand at 632.780 kb on + strand, within Shewana3_0538 at 632.853 kb on + strand, within Shewana3_0538 at 632.861 kb on + strand, within Shewana3_0538 at 632.901 kb on - strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.158 kb on - strand at 633.208 kb on + strand at 633.208 kb on + strand at 633.209 kb on + strand at 633.209 kb on + strand at 633.216 kb on - strand at 633.216 kb on - strand at 633.216 kb on - strand at 633.217 kb on - strand at 633.220 kb on + strand at 633.220 kb on + strand at 633.356 kb on + strand, within Shewana3_0539 at 633.399 kb on + strand, within Shewana3_0539 at 633.405 kb on - strand, within Shewana3_0539 at 633.444 kb on - strand, within Shewana3_0539 at 633.503 kb on + strand, within Shewana3_0539 at 633.503 kb on + strand, within Shewana3_0539 at 633.543 kb on + strand, within Shewana3_0539 at 633.543 kb on + strand, within Shewana3_0539
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 630,185 - -0.6 630,269 + Shewana3_0536 0.11 -0.5 630,381 - Shewana3_0536 0.24 -0.0 630,450 - Shewana3_0536 0.32 +0.2 630,540 - Shewana3_0536 0.42 +0.4 630,763 - Shewana3_0536 0.68 +0.6 630,786 - Shewana3_0536 0.70 -0.7 630,848 + Shewana3_0536 0.78 -0.5 631,016 + +0.1 631,016 + +0.4 631,016 + +0.2 631,024 - -0.7 631,024 - +0.3 631,336 + Shewana3_0537 0.12 -1.2 631,344 - Shewana3_0537 0.13 -0.1 631,378 - Shewana3_0537 0.15 +0.8 631,392 + Shewana3_0537 0.16 +0.1 631,526 + Shewana3_0537 0.25 -0.1 631,534 - Shewana3_0537 0.26 -0.3 631,608 + Shewana3_0537 0.31 +0.6 631,682 - Shewana3_0537 0.36 +0.7 631,877 - Shewana3_0537 0.50 +0.5 632,000 + Shewana3_0537 0.58 -0.1 632,131 + Shewana3_0537 0.67 +0.6 632,139 - Shewana3_0537 0.68 +0.9 632,196 + Shewana3_0537 0.72 +0.9 632,196 + Shewana3_0537 0.72 +0.1 632,196 + Shewana3_0537 0.72 -1.1 632,204 - Shewana3_0537 0.72 +0.9 632,320 - Shewana3_0537 0.80 -0.1 632,320 - Shewana3_0537 0.80 +0.5 632,350 - Shewana3_0537 0.83 +0.3 632,412 - Shewana3_0537 0.87 -0.9 632,672 - -0.8 632,674 + -0.9 632,780 + Shewana3_0538 0.23 -0.8 632,853 + Shewana3_0538 0.40 -0.9 632,861 + Shewana3_0538 0.42 -0.5 632,901 - Shewana3_0538 0.52 +0.7 633,039 + Shewana3_0538 0.85 +0.2 633,039 + Shewana3_0538 0.85 -0.7 633,039 + Shewana3_0538 0.85 +0.1 633,039 + Shewana3_0538 0.85 +0.7 633,039 + Shewana3_0538 0.85 -0.2 633,158 - -0.1 633,208 + +0.0 633,208 + -0.5 633,209 + -0.3 633,209 + -0.1 633,216 - -0.6 633,216 - -0.3 633,216 - +0.9 633,217 - -0.5 633,220 + -0.7 633,220 + -0.3 633,356 + Shewana3_0539 0.14 -1.8 633,399 + Shewana3_0539 0.17 -0.0 633,405 - Shewana3_0539 0.17 -1.6 633,444 - Shewana3_0539 0.20 -0.4 633,503 + Shewana3_0539 0.25 -1.1 633,503 + Shewana3_0539 0.25 -0.2 633,543 + Shewana3_0539 0.28 -1.6 633,543 + Shewana3_0539 0.28 -1.0
Or see this region's nucleotide sequence