Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0531 and Shewana3_0532 are separated by 500 nucleotides Shewana3_0532 and Shewana3_0533 are separated by 40 nucleotides
Shewana3_0531: Shewana3_0531 - lysine exporter protein LysE/YggA (RefSeq), at 625,299 to 625,910
_0531
Shewana3_0532: Shewana3_0532 - ArsR family transcriptional regulator (RefSeq), at 626,411 to 626,755
_0532
Shewana3_0533: Shewana3_0533 - bile acid:sodium symporter (RefSeq), at 626,796 to 627,815
_0533
Position (kb) 626
627 Strain fitness (log2 ratio) -1
0
1
2 at 625.473 kb on + strand, within Shewana3_0531 at 625.543 kb on + strand, within Shewana3_0531 at 625.565 kb on - strand, within Shewana3_0531 at 625.761 kb on + strand, within Shewana3_0531 at 625.769 kb on - strand, within Shewana3_0531 at 625.769 kb on - strand, within Shewana3_0531 at 625.769 kb on - strand, within Shewana3_0531 at 625.771 kb on + strand, within Shewana3_0531 at 625.771 kb on + strand, within Shewana3_0531 at 625.796 kb on - strand, within Shewana3_0531 at 625.808 kb on + strand, within Shewana3_0531 at 625.854 kb on - strand at 625.856 kb on + strand at 625.856 kb on + strand at 625.856 kb on + strand at 625.856 kb on + strand at 626.033 kb on + strand at 626.052 kb on + strand at 626.053 kb on - strand at 626.107 kb on - strand at 626.217 kb on - strand at 626.455 kb on + strand, within Shewana3_0532 at 626.463 kb on - strand, within Shewana3_0532 at 626.535 kb on - strand, within Shewana3_0532 at 626.672 kb on - strand, within Shewana3_0532 at 626.736 kb on - strand at 626.827 kb on + strand at 626.848 kb on + strand at 626.964 kb on - strand, within Shewana3_0533 at 627.226 kb on + strand, within Shewana3_0533
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 625,473 + Shewana3_0531 0.28 -1.5 625,543 + Shewana3_0531 0.40 +0.2 625,565 - Shewana3_0531 0.43 -0.4 625,761 + Shewana3_0531 0.75 +0.3 625,769 - Shewana3_0531 0.77 +0.6 625,769 - Shewana3_0531 0.77 +0.2 625,769 - Shewana3_0531 0.77 -0.2 625,771 + Shewana3_0531 0.77 -0.4 625,771 + Shewana3_0531 0.77 +1.1 625,796 - Shewana3_0531 0.81 +0.5 625,808 + Shewana3_0531 0.83 -0.2 625,854 - +0.3 625,856 + +0.1 625,856 + +0.9 625,856 + +0.1 625,856 + -0.1 626,033 + +0.7 626,052 + +0.2 626,053 - +0.9 626,107 - +1.1 626,217 - -0.3 626,455 + Shewana3_0532 0.13 +0.6 626,463 - Shewana3_0532 0.15 +0.8 626,535 - Shewana3_0532 0.36 +0.8 626,672 - Shewana3_0532 0.76 -0.7 626,736 - +0.3 626,827 + -0.2 626,848 + -1.3 626,964 - Shewana3_0533 0.16 +1.9 627,226 + Shewana3_0533 0.42 +0.1
Or see this region's nucleotide sequence