Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0509 and Shewana3_0510 are separated by 27 nucleotides Shewana3_0510 and Shewana3_0511 are separated by 33 nucleotides Shewana3_0511 and Shewana3_0512 are separated by 101 nucleotides Shewana3_0512 and Shewana3_0513 are separated by 148 nucleotides
Shewana3_0509: Shewana3_0509 - short-chain dehydrogenase/reductase SDR (RefSeq), at 601,031 to 601,708
_0509
Shewana3_0510: Shewana3_0510 - biotin carboxyl carrier protein (RefSeq), at 601,736 to 602,191
_0510
Shewana3_0511: Shewana3_0511 - 3-dehydroquinate dehydratase (RefSeq), at 602,225 to 602,659
_0511
Shewana3_0512: Shewana3_0512 - peptidyl-tRNA hydrolase domain protein (RefSeq), at 602,761 to 603,174
_0512
Shewana3_0513: Shewana3_0513 - hypothetical protein (RefSeq), at 603,323 to 603,688
_0513
Position (kb) 602
603 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 601.308 kb on + strand, within Shewana3_0509 at 601.338 kb on - strand, within Shewana3_0509 at 601.426 kb on + strand, within Shewana3_0509 at 601.469 kb on + strand, within Shewana3_0509 at 601.521 kb on + strand, within Shewana3_0509 at 601.686 kb on - strand at 601.878 kb on - strand, within Shewana3_0510 at 601.904 kb on + strand, within Shewana3_0510 at 601.956 kb on + strand, within Shewana3_0510 at 601.964 kb on - strand, within Shewana3_0510 at 601.992 kb on + strand, within Shewana3_0510 at 602.010 kb on + strand, within Shewana3_0510 at 602.023 kb on + strand, within Shewana3_0510 at 602.023 kb on + strand, within Shewana3_0510 at 602.031 kb on - strand, within Shewana3_0510 at 602.031 kb on - strand, within Shewana3_0510 at 602.048 kb on - strand, within Shewana3_0510 at 602.059 kb on - strand, within Shewana3_0510 at 602.270 kb on + strand, within Shewana3_0511 at 602.278 kb on - strand, within Shewana3_0511 at 602.423 kb on - strand, within Shewana3_0511 at 602.434 kb on - strand, within Shewana3_0511 at 602.488 kb on + strand, within Shewana3_0511 at 602.576 kb on + strand, within Shewana3_0511 at 602.584 kb on - strand, within Shewana3_0511 at 602.768 kb on + strand at 602.768 kb on + strand at 602.776 kb on - strand at 602.821 kb on + strand, within Shewana3_0512 at 602.836 kb on + strand, within Shewana3_0512 at 602.931 kb on + strand, within Shewana3_0512 at 602.939 kb on - strand, within Shewana3_0512 at 603.200 kb on + strand at 603.212 kb on + strand at 603.213 kb on + strand at 603.318 kb on + strand at 603.603 kb on + strand, within Shewana3_0513 at 603.603 kb on + strand, within Shewana3_0513 at 603.611 kb on - strand, within Shewana3_0513 at 603.611 kb on - strand, within Shewana3_0513 at 603.611 kb on - strand, within Shewana3_0513
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 601,308 + Shewana3_0509 0.41 +0.4 601,338 - Shewana3_0509 0.45 +0.8 601,426 + Shewana3_0509 0.58 +0.2 601,469 + Shewana3_0509 0.65 -0.2 601,521 + Shewana3_0509 0.72 -0.0 601,686 - +1.2 601,878 - Shewana3_0510 0.31 -1.0 601,904 + Shewana3_0510 0.37 +0.8 601,956 + Shewana3_0510 0.48 -0.3 601,964 - Shewana3_0510 0.50 -0.7 601,992 + Shewana3_0510 0.56 +1.0 602,010 + Shewana3_0510 0.60 +0.3 602,023 + Shewana3_0510 0.63 -0.3 602,023 + Shewana3_0510 0.63 -0.2 602,031 - Shewana3_0510 0.65 +0.1 602,031 - Shewana3_0510 0.65 +0.1 602,048 - Shewana3_0510 0.68 -0.1 602,059 - Shewana3_0510 0.71 -3.3 602,270 + Shewana3_0511 0.10 -0.1 602,278 - Shewana3_0511 0.12 -4.1 602,423 - Shewana3_0511 0.46 -2.1 602,434 - Shewana3_0511 0.48 -3.4 602,488 + Shewana3_0511 0.60 -3.1 602,576 + Shewana3_0511 0.81 -1.9 602,584 - Shewana3_0511 0.83 -2.7 602,768 + -0.6 602,768 + -0.4 602,776 - -0.0 602,821 + Shewana3_0512 0.14 -0.6 602,836 + Shewana3_0512 0.18 +0.8 602,931 + Shewana3_0512 0.41 -0.2 602,939 - Shewana3_0512 0.43 +0.2 603,200 + -0.6 603,212 + +0.4 603,213 + +0.7 603,318 + -0.3 603,603 + Shewana3_0513 0.77 +0.1 603,603 + Shewana3_0513 0.77 +0.9 603,611 - Shewana3_0513 0.79 +0.9 603,611 - Shewana3_0513 0.79 +0.8 603,611 - Shewana3_0513 0.79 -0.7
Or see this region's nucleotide sequence