Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0504 and fre are separated by 267 nucleotides
Shewana3_0504: Shewana3_0504 - hypothetical protein (RefSeq), at 595,234 to 596,148
_0504
Shewana3_0505: fre - FMN reductase (RefSeq), at 596,416 to 597,114
fre
Position (kb) 595
596
597 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 594.299 kb on + strand at 594.301 kb on + strand at 594.307 kb on - strand at 594.328 kb on - strand at 594.355 kb on + strand at 594.375 kb on + strand at 594.474 kb on + strand at 594.474 kb on + strand at 594.474 kb on + strand at 594.474 kb on + strand at 594.482 kb on - strand at 594.543 kb on + strand at 594.543 kb on + strand at 594.543 kb on + strand at 594.551 kb on - strand at 594.559 kb on + strand at 594.610 kb on + strand at 594.619 kb on - strand at 594.629 kb on + strand at 594.651 kb on - strand at 594.651 kb on - strand at 594.683 kb on + strand at 594.688 kb on + strand at 594.707 kb on + strand at 594.708 kb on + strand at 594.708 kb on + strand at 594.716 kb on - strand at 594.718 kb on + strand at 594.724 kb on + strand at 594.724 kb on + strand at 594.724 kb on + strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.744 kb on + strand at 594.752 kb on - strand at 594.795 kb on + strand at 594.803 kb on - strand at 594.811 kb on - strand at 594.813 kb on - strand at 594.820 kb on + strand at 594.855 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.931 kb on + strand at 594.949 kb on + strand at 594.957 kb on + strand at 594.957 kb on + strand at 594.957 kb on + strand at 594.965 kb on + strand at 594.965 kb on - strand at 594.972 kb on + strand at 594.972 kb on + strand at 594.972 kb on + strand at 594.979 kb on - strand at 594.980 kb on - strand at 594.980 kb on - strand at 594.990 kb on - strand at 595.005 kb on + strand at 595.010 kb on + strand at 595.055 kb on + strand at 595.055 kb on + strand at 595.062 kb on + strand at 595.070 kb on - strand at 595.085 kb on - strand at 595.139 kb on + strand at 595.143 kb on + strand at 595.151 kb on - strand at 595.151 kb on - strand at 595.162 kb on + strand at 595.162 kb on + strand at 595.170 kb on - strand at 595.207 kb on + strand at 595.219 kb on + strand at 595.263 kb on + strand at 595.269 kb on + strand at 595.275 kb on + strand at 595.277 kb on - strand at 595.277 kb on - strand at 595.291 kb on - strand at 595.300 kb on + strand at 595.339 kb on - strand, within Shewana3_0504 at 595.341 kb on + strand, within Shewana3_0504 at 595.341 kb on - strand, within Shewana3_0504 at 595.349 kb on - strand, within Shewana3_0504 at 595.349 kb on - strand, within Shewana3_0504 at 595.367 kb on + strand, within Shewana3_0504 at 595.372 kb on - strand, within Shewana3_0504 at 595.388 kb on + strand, within Shewana3_0504 at 595.416 kb on - strand, within Shewana3_0504 at 595.448 kb on + strand, within Shewana3_0504 at 595.489 kb on + strand, within Shewana3_0504 at 595.491 kb on + strand, within Shewana3_0504 at 595.501 kb on + strand, within Shewana3_0504 at 595.501 kb on + strand, within Shewana3_0504 at 595.506 kb on + strand, within Shewana3_0504 at 595.509 kb on - strand, within Shewana3_0504 at 595.557 kb on + strand, within Shewana3_0504 at 595.563 kb on + strand, within Shewana3_0504 at 595.611 kb on - strand, within Shewana3_0504 at 595.632 kb on + strand, within Shewana3_0504 at 595.642 kb on - strand, within Shewana3_0504 at 595.680 kb on + strand, within Shewana3_0504 at 595.703 kb on + strand, within Shewana3_0504 at 595.703 kb on + strand, within Shewana3_0504 at 595.703 kb on + strand, within Shewana3_0504 at 595.708 kb on + strand, within Shewana3_0504 at 595.711 kb on - strand, within Shewana3_0504 at 595.716 kb on - strand, within Shewana3_0504 at 595.719 kb on + strand, within Shewana3_0504 at 595.733 kb on - strand, within Shewana3_0504 at 595.762 kb on + strand, within Shewana3_0504 at 595.770 kb on - strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.853 kb on + strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.861 kb on - strand, within Shewana3_0504 at 595.960 kb on - strand, within Shewana3_0504 at 595.980 kb on + strand, within Shewana3_0504 at 595.982 kb on - strand, within Shewana3_0504 at 596.004 kb on + strand, within Shewana3_0504 at 596.024 kb on + strand, within Shewana3_0504 at 596.024 kb on + strand, within Shewana3_0504 at 596.051 kb on + strand, within Shewana3_0504 at 596.072 kb on + strand at 596.077 kb on + strand at 596.085 kb on - strand at 596.098 kb on + strand at 596.125 kb on + strand at 596.150 kb on - strand at 596.150 kb on - strand at 596.152 kb on + strand at 596.190 kb on - strand at 596.207 kb on + strand at 596.218 kb on + strand at 596.218 kb on + strand at 596.223 kb on + strand at 596.223 kb on + strand at 596.226 kb on - strand at 596.233 kb on + strand at 596.365 kb on - strand at 596.492 kb on + strand, within fre at 596.710 kb on - strand, within fre at 596.759 kb on + strand, within fre at 596.794 kb on + strand, within fre at 596.794 kb on + strand, within fre at 596.829 kb on - strand, within fre
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 594,299 + +0.8 594,301 + -1.2 594,307 - +0.6 594,328 - +0.3 594,355 + -1.0 594,375 + +0.7 594,474 + +1.0 594,474 + -1.8 594,474 + -1.0 594,474 + -0.1 594,482 - -1.0 594,543 + -0.0 594,543 + +0.3 594,543 + +0.1 594,551 - -0.9 594,559 + +0.3 594,610 + -2.2 594,619 - +0.7 594,629 + +0.6 594,651 - -0.6 594,651 - +1.2 594,683 + -0.4 594,688 + +1.2 594,707 + +1.1 594,708 + -1.0 594,708 + -0.8 594,716 - -0.5 594,718 + +0.1 594,724 + +0.4 594,724 + -0.2 594,724 + +0.6 594,732 - +0.0 594,732 - -0.6 594,732 - +0.8 594,732 - -0.8 594,732 - -1.1 594,732 - +1.4 594,744 + +0.8 594,752 - +0.8 594,795 + +0.2 594,803 - +0.3 594,811 - +0.3 594,813 - +1.1 594,820 + +0.5 594,855 + +0.4 594,913 + +0.8 594,913 + +1.0 594,913 + -0.1 594,913 + +0.7 594,913 + -0.1 594,913 + +0.1 594,913 + +0.2 594,913 + +0.2 594,913 + +0.8 594,913 + +0.3 594,913 + +0.1 594,913 + +0.2 594,921 - -0.9 594,921 - +1.8 594,921 - -0.4 594,921 - -0.5 594,921 - -1.0 594,921 - -0.4 594,921 - -0.7 594,921 - +0.7 594,931 + -0.5 594,949 + +0.5 594,957 + -0.9 594,957 + +0.9 594,957 + -0.4 594,965 + +0.2 594,965 - -1.8 594,972 + -0.9 594,972 + -0.1 594,972 + +0.2 594,979 - +0.7 594,980 - +0.5 594,980 - +1.9 594,990 - -1.1 595,005 + -0.0 595,010 + -0.7 595,055 + +0.6 595,055 + +0.3 595,062 + -0.1 595,070 - -1.2 595,085 - +2.9 595,139 + +0.9 595,143 + -0.4 595,151 - -0.5 595,151 - +1.9 595,162 + -0.2 595,162 + +1.0 595,170 - -0.7 595,207 + -0.7 595,219 + -0.6 595,263 + +0.9 595,269 + -0.9 595,275 + -0.4 595,277 - -1.0 595,277 - +0.3 595,291 - +1.2 595,300 + +0.2 595,339 - Shewana3_0504 0.11 -0.3 595,341 + Shewana3_0504 0.12 -0.2 595,341 - Shewana3_0504 0.12 +0.0 595,349 - Shewana3_0504 0.13 -1.6 595,349 - Shewana3_0504 0.13 +0.7 595,367 + Shewana3_0504 0.15 +0.9 595,372 - Shewana3_0504 0.15 +0.6 595,388 + Shewana3_0504 0.17 +0.1 595,416 - Shewana3_0504 0.20 +0.2 595,448 + Shewana3_0504 0.23 +0.3 595,489 + Shewana3_0504 0.28 -0.0 595,491 + Shewana3_0504 0.28 +0.9 595,501 + Shewana3_0504 0.29 -0.3 595,501 + Shewana3_0504 0.29 -1.4 595,506 + Shewana3_0504 0.30 +0.4 595,509 - Shewana3_0504 0.30 +1.0 595,557 + Shewana3_0504 0.35 +1.0 595,563 + Shewana3_0504 0.36 -0.3 595,611 - Shewana3_0504 0.41 +1.2 595,632 + Shewana3_0504 0.43 +1.2 595,642 - Shewana3_0504 0.45 -1.3 595,680 + Shewana3_0504 0.49 -0.2 595,703 + Shewana3_0504 0.51 +0.8 595,703 + Shewana3_0504 0.51 +0.6 595,703 + Shewana3_0504 0.51 +0.6 595,708 + Shewana3_0504 0.52 -0.5 595,711 - Shewana3_0504 0.52 +0.0 595,716 - Shewana3_0504 0.53 +0.1 595,719 + Shewana3_0504 0.53 +0.1 595,733 - Shewana3_0504 0.55 +0.8 595,762 + Shewana3_0504 0.58 +0.8 595,770 - Shewana3_0504 0.59 +0.5 595,851 + Shewana3_0504 0.67 +0.8 595,851 + Shewana3_0504 0.67 +0.0 595,851 + Shewana3_0504 0.67 -0.1 595,851 + Shewana3_0504 0.67 +0.2 595,851 + Shewana3_0504 0.67 +0.9 595,851 + Shewana3_0504 0.67 -0.1 595,851 + Shewana3_0504 0.67 +0.3 595,851 + Shewana3_0504 0.67 -0.0 595,851 + Shewana3_0504 0.67 -0.6 595,851 + Shewana3_0504 0.67 +0.5 595,851 + Shewana3_0504 0.67 -0.6 595,851 + Shewana3_0504 0.67 +0.4 595,851 + Shewana3_0504 0.67 +0.4 595,851 + Shewana3_0504 0.67 +0.2 595,851 + Shewana3_0504 0.67 +0.1 595,851 + Shewana3_0504 0.67 -0.7 595,851 + Shewana3_0504 0.67 -0.1 595,851 + Shewana3_0504 0.67 +0.2 595,851 + Shewana3_0504 0.67 +0.2 595,853 + Shewana3_0504 0.68 -0.7 595,859 - Shewana3_0504 0.68 -1.0 595,859 - Shewana3_0504 0.68 +1.0 595,859 - Shewana3_0504 0.68 +0.7 595,859 - Shewana3_0504 0.68 -0.2 595,859 - Shewana3_0504 0.68 +0.2 595,859 - Shewana3_0504 0.68 -0.2 595,859 - Shewana3_0504 0.68 +0.7 595,859 - Shewana3_0504 0.68 -2.0 595,859 - Shewana3_0504 0.68 -2.4 595,859 - Shewana3_0504 0.68 +0.0 595,859 - Shewana3_0504 0.68 +0.4 595,861 - Shewana3_0504 0.69 +1.1 595,960 - Shewana3_0504 0.79 -0.3 595,980 + Shewana3_0504 0.82 +0.4 595,982 - Shewana3_0504 0.82 +0.7 596,004 + Shewana3_0504 0.84 -0.2 596,024 + Shewana3_0504 0.86 -0.1 596,024 + Shewana3_0504 0.86 +0.1 596,051 + Shewana3_0504 0.89 +0.2 596,072 + -0.1 596,077 + +0.9 596,085 - +0.7 596,098 + -0.0 596,125 + +0.8 596,150 - +1.6 596,150 - +0.8 596,152 + -1.1 596,190 - +0.0 596,207 + -0.7 596,218 + -0.3 596,218 + +0.4 596,223 + -0.3 596,223 + -0.9 596,226 - -0.6 596,233 + +0.8 596,365 - +0.9 596,492 + fre Shewana3_0505 0.11 -1.3 596,710 - fre Shewana3_0505 0.42 +0.1 596,759 + fre Shewana3_0505 0.49 -1.3 596,794 + fre Shewana3_0505 0.54 -4.1 596,794 + fre Shewana3_0505 0.54 -1.9 596,829 - fre Shewana3_0505 0.59 -0.7
Or see this region's nucleotide sequence