Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0502 and Shewana3_0503 are separated by 149 nucleotides
Shewana3_0502: Shewana3_0502 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 588,256 to 593,202
_0502
Shewana3_0503: Shewana3_0503 - flavoprotein oxygenase (RefSeq), at 593,352 to 593,978
_0503
Position (kb) 593
594 Strain fitness (log2 ratio) -2
-1
0
1
2 at 592.386 kb on + strand, within Shewana3_0502 at 592.472 kb on - strand, within Shewana3_0502 at 592.523 kb on + strand, within Shewana3_0502 at 592.530 kb on - strand, within Shewana3_0502 at 592.530 kb on - strand, within Shewana3_0502 at 592.577 kb on - strand, within Shewana3_0502 at 592.587 kb on - strand, within Shewana3_0502 at 592.587 kb on - strand, within Shewana3_0502 at 592.637 kb on + strand, within Shewana3_0502 at 592.646 kb on + strand, within Shewana3_0502 at 592.654 kb on - strand, within Shewana3_0502 at 592.659 kb on - strand, within Shewana3_0502 at 592.666 kb on - strand, within Shewana3_0502 at 592.887 kb on - strand at 592.889 kb on + strand at 592.931 kb on - strand at 592.931 kb on - strand at 592.945 kb on - strand at 593.142 kb on - strand at 593.254 kb on + strand at 593.319 kb on + strand at 593.555 kb on - strand, within Shewana3_0503 at 593.667 kb on - strand, within Shewana3_0503 at 593.697 kb on - strand, within Shewana3_0503 at 593.759 kb on + strand, within Shewana3_0503 at 593.759 kb on + strand, within Shewana3_0503 at 593.833 kb on - strand, within Shewana3_0503 at 593.960 kb on + strand at 593.973 kb on + strand at 594.299 kb on + strand at 594.301 kb on + strand at 594.307 kb on - strand at 594.328 kb on - strand at 594.355 kb on + strand at 594.375 kb on + strand at 594.474 kb on + strand at 594.474 kb on + strand at 594.474 kb on + strand at 594.474 kb on + strand at 594.482 kb on - strand at 594.543 kb on + strand at 594.543 kb on + strand at 594.543 kb on + strand at 594.551 kb on - strand at 594.559 kb on + strand at 594.610 kb on + strand at 594.619 kb on - strand at 594.629 kb on + strand at 594.651 kb on - strand at 594.651 kb on - strand at 594.683 kb on + strand at 594.688 kb on + strand at 594.707 kb on + strand at 594.708 kb on + strand at 594.708 kb on + strand at 594.716 kb on - strand at 594.718 kb on + strand at 594.724 kb on + strand at 594.724 kb on + strand at 594.724 kb on + strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.744 kb on + strand at 594.752 kb on - strand at 594.795 kb on + strand at 594.803 kb on - strand at 594.811 kb on - strand at 594.813 kb on - strand at 594.820 kb on + strand at 594.855 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.931 kb on + strand at 594.949 kb on + strand at 594.957 kb on + strand at 594.957 kb on + strand at 594.957 kb on + strand at 594.965 kb on + strand at 594.965 kb on - strand at 594.972 kb on + strand at 594.972 kb on + strand at 594.972 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 592,386 + Shewana3_0502 0.83 +0.4 592,472 - Shewana3_0502 0.85 -2.0 592,523 + Shewana3_0502 0.86 +0.1 592,530 - Shewana3_0502 0.86 +0.9 592,530 - Shewana3_0502 0.86 -0.3 592,577 - Shewana3_0502 0.87 +1.9 592,587 - Shewana3_0502 0.88 -0.9 592,587 - Shewana3_0502 0.88 +0.7 592,637 + Shewana3_0502 0.89 +0.4 592,646 + Shewana3_0502 0.89 -0.1 592,654 - Shewana3_0502 0.89 +0.7 592,659 - Shewana3_0502 0.89 +0.3 592,666 - Shewana3_0502 0.89 +0.2 592,887 - +0.1 592,889 + -0.9 592,931 - +1.9 592,931 - +0.6 592,945 - +0.4 593,142 - +0.1 593,254 + +0.2 593,319 + +0.0 593,555 - Shewana3_0503 0.32 +0.2 593,667 - Shewana3_0503 0.50 +0.5 593,697 - Shewana3_0503 0.55 -0.1 593,759 + Shewana3_0503 0.65 +0.5 593,759 + Shewana3_0503 0.65 +0.5 593,833 - Shewana3_0503 0.77 +0.3 593,960 + -0.9 593,973 + +0.7 594,299 + +0.8 594,301 + -1.2 594,307 - +0.6 594,328 - +0.3 594,355 + -1.0 594,375 + +0.7 594,474 + +1.0 594,474 + -1.8 594,474 + -1.0 594,474 + -0.1 594,482 - -1.0 594,543 + -0.0 594,543 + +0.3 594,543 + +0.1 594,551 - -0.9 594,559 + +0.3 594,610 + -2.2 594,619 - +0.7 594,629 + +0.6 594,651 - -0.6 594,651 - +1.2 594,683 + -0.4 594,688 + +1.2 594,707 + +1.1 594,708 + -1.0 594,708 + -0.8 594,716 - -0.5 594,718 + +0.1 594,724 + +0.4 594,724 + -0.2 594,724 + +0.6 594,732 - +0.0 594,732 - -0.6 594,732 - +0.8 594,732 - -0.8 594,732 - -1.1 594,732 - +1.4 594,744 + +0.8 594,752 - +0.8 594,795 + +0.2 594,803 - +0.3 594,811 - +0.3 594,813 - +1.1 594,820 + +0.5 594,855 + +0.4 594,913 + +0.8 594,913 + +1.0 594,913 + -0.1 594,913 + +0.7 594,913 + -0.1 594,913 + +0.1 594,913 + +0.2 594,913 + +0.2 594,913 + +0.8 594,913 + +0.3 594,913 + +0.1 594,913 + +0.2 594,921 - -0.9 594,921 - +1.8 594,921 - -0.4 594,921 - -0.5 594,921 - -1.0 594,921 - -0.4 594,921 - -0.7 594,921 - +0.7 594,931 + -0.5 594,949 + +0.5 594,957 + -0.9 594,957 + +0.9 594,957 + -0.4 594,965 + +0.2 594,965 - -1.8 594,972 + -0.9 594,972 + -0.1 594,972 + +0.2
Or see this region's nucleotide sequence