Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0448 and Shewana3_0449 are separated by 219 nucleotides Shewana3_0449 and Shewana3_0450 are separated by 333 nucleotides Shewana3_0450 and Shewana3_0451 are separated by 84 nucleotides
Shewana3_0448: Shewana3_0448 - major facilitator transporter (RefSeq), at 523,260 to 524,432
_0448
Shewana3_0449: Shewana3_0449 - diguanylate cyclase with GAF sensor (RefSeq), at 524,652 to 525,695
_0449
Shewana3_0450: Shewana3_0450 - no description, at 526,029 to 526,265
_0450
Shewana3_0451: Shewana3_0451 - anion transporter (RefSeq), at 526,350 to 527,750
_0451
Position (kb) 524
525
526 Strain fitness (log2 ratio) -1
0
1 at 523.661 kb on + strand, within Shewana3_0448 at 523.667 kb on - strand, within Shewana3_0448 at 523.667 kb on - strand, within Shewana3_0448 at 523.747 kb on + strand, within Shewana3_0448 at 523.815 kb on - strand, within Shewana3_0448 at 524.485 kb on + strand at 524.485 kb on + strand at 524.493 kb on - strand at 524.497 kb on + strand at 524.507 kb on + strand at 524.549 kb on - strand at 524.658 kb on - strand at 524.665 kb on + strand at 524.673 kb on - strand at 524.785 kb on - strand, within Shewana3_0449 at 524.789 kb on + strand, within Shewana3_0449 at 524.789 kb on + strand, within Shewana3_0449 at 524.797 kb on - strand, within Shewana3_0449 at 524.797 kb on - strand, within Shewana3_0449 at 524.833 kb on - strand, within Shewana3_0449 at 524.951 kb on - strand, within Shewana3_0449 at 525.085 kb on + strand, within Shewana3_0449 at 525.271 kb on + strand, within Shewana3_0449 at 525.327 kb on + strand, within Shewana3_0449 at 525.368 kb on - strand, within Shewana3_0449 at 525.393 kb on + strand, within Shewana3_0449 at 525.425 kb on + strand, within Shewana3_0449 at 525.516 kb on + strand, within Shewana3_0449 at 525.527 kb on + strand, within Shewana3_0449 at 525.549 kb on - strand, within Shewana3_0449 at 525.657 kb on - strand at 525.668 kb on + strand at 525.705 kb on + strand at 525.712 kb on + strand at 526.090 kb on + strand, within Shewana3_0450 at 526.463 kb on + strand at 526.471 kb on - strand at 526.508 kb on - strand, within Shewana3_0451 at 526.517 kb on - strand, within Shewana3_0451 at 526.542 kb on - strand, within Shewana3_0451 at 526.594 kb on + strand, within Shewana3_0451
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 523,661 + Shewana3_0448 0.34 -0.7 523,667 - Shewana3_0448 0.35 -0.4 523,667 - Shewana3_0448 0.35 +0.7 523,747 + Shewana3_0448 0.42 +0.2 523,815 - Shewana3_0448 0.47 -0.1 524,485 + -0.0 524,485 + +0.1 524,493 - +0.6 524,497 + -0.3 524,507 + +0.3 524,549 - +0.9 524,658 - +1.0 524,665 + -0.7 524,673 - -0.9 524,785 - Shewana3_0449 0.13 +0.7 524,789 + Shewana3_0449 0.13 +1.0 524,789 + Shewana3_0449 0.13 -0.9 524,797 - Shewana3_0449 0.14 -0.1 524,797 - Shewana3_0449 0.14 -0.1 524,833 - Shewana3_0449 0.17 -0.2 524,951 - Shewana3_0449 0.29 +0.0 525,085 + Shewana3_0449 0.41 +0.2 525,271 + Shewana3_0449 0.59 +0.8 525,327 + Shewana3_0449 0.65 -0.1 525,368 - Shewana3_0449 0.69 +1.2 525,393 + Shewana3_0449 0.71 -0.1 525,425 + Shewana3_0449 0.74 +0.0 525,516 + Shewana3_0449 0.83 -0.2 525,527 + Shewana3_0449 0.84 -1.4 525,549 - Shewana3_0449 0.86 +0.5 525,657 - +0.9 525,668 + +0.6 525,705 + -1.4 525,712 + +0.9 526,090 + Shewana3_0450 0.26 +0.0 526,463 + +0.4 526,471 - +0.3 526,508 - Shewana3_0451 0.11 +0.8 526,517 - Shewana3_0451 0.12 +0.0 526,542 - Shewana3_0451 0.14 +0.2 526,594 + Shewana3_0451 0.17 +0.4
Or see this region's nucleotide sequence