Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0439 and Shewana3_0440 are separated by 180 nucleotides Shewana3_0440 and purH are separated by 105 nucleotides
Shewana3_0439: Shewana3_0439 - hypothetical protein (RefSeq), at 510,981 to 514,202
_0439
Shewana3_0440: Shewana3_0440 - phosphoribosylamine--glycine ligase (RefSeq), at 514,383 to 515,681
_0440
Shewana3_0441: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (RefSeq), at 515,787 to 517,385
purH
Position (kb) 514
515
516 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 513.602 kb on + strand, within Shewana3_0439 at 513.737 kb on - strand, within Shewana3_0439 at 513.830 kb on + strand, within Shewana3_0439 at 513.838 kb on - strand, within Shewana3_0439 at 514.068 kb on - strand at 514.092 kb on + strand at 514.386 kb on + strand at 514.394 kb on - strand at 514.494 kb on - strand at 514.509 kb on + strand at 514.511 kb on - strand at 514.536 kb on + strand, within Shewana3_0440 at 514.552 kb on - strand, within Shewana3_0440 at 514.582 kb on + strand, within Shewana3_0440 at 514.613 kb on - strand, within Shewana3_0440 at 514.613 kb on - strand, within Shewana3_0440 at 514.713 kb on - strand, within Shewana3_0440 at 514.732 kb on + strand, within Shewana3_0440 at 514.845 kb on + strand, within Shewana3_0440 at 514.853 kb on - strand, within Shewana3_0440 at 514.919 kb on + strand, within Shewana3_0440 at 514.999 kb on - strand, within Shewana3_0440 at 515.103 kb on - strand, within Shewana3_0440 at 515.209 kb on + strand, within Shewana3_0440 at 515.283 kb on + strand, within Shewana3_0440 at 515.291 kb on - strand, within Shewana3_0440 at 515.318 kb on - strand, within Shewana3_0440 at 515.352 kb on - strand, within Shewana3_0440 at 515.366 kb on + strand, within Shewana3_0440 at 515.374 kb on - strand, within Shewana3_0440 at 515.374 kb on - strand, within Shewana3_0440 at 515.425 kb on + strand, within Shewana3_0440 at 515.433 kb on - strand, within Shewana3_0440 at 515.462 kb on + strand, within Shewana3_0440 at 515.516 kb on + strand, within Shewana3_0440 at 515.516 kb on + strand, within Shewana3_0440 at 515.524 kb on - strand, within Shewana3_0440 at 515.524 kb on - strand, within Shewana3_0440 at 515.593 kb on + strand at 515.593 kb on + strand at 515.596 kb on - strand at 515.601 kb on - strand at 515.603 kb on + strand at 515.736 kb on - strand at 515.956 kb on - strand, within purH at 515.983 kb on - strand, within purH at 515.983 kb on - strand, within purH at 515.983 kb on - strand, within purH at 516.165 kb on - strand, within purH at 516.169 kb on + strand, within purH at 516.169 kb on + strand, within purH at 516.169 kb on + strand, within purH at 516.178 kb on - strand, within purH at 516.258 kb on - strand, within purH at 516.388 kb on - strand, within purH at 516.481 kb on + strand, within purH at 516.481 kb on + strand, within purH at 516.491 kb on + strand, within purH at 516.499 kb on + strand, within purH at 516.499 kb on - strand, within purH at 516.499 kb on - strand, within purH at 516.499 kb on - strand, within purH at 516.556 kb on - strand, within purH at 516.566 kb on - strand, within purH at 516.599 kb on + strand, within purH
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 513,602 + Shewana3_0439 0.81 -0.3 513,737 - Shewana3_0439 0.86 -0.5 513,830 + Shewana3_0439 0.88 +0.7 513,838 - Shewana3_0439 0.89 +0.3 514,068 - -0.2 514,092 + +0.1 514,386 + -1.7 514,394 - -0.7 514,494 - -3.0 514,509 + -3.1 514,511 - -4.1 514,536 + Shewana3_0440 0.12 -3.5 514,552 - Shewana3_0440 0.13 -3.3 514,582 + Shewana3_0440 0.15 -4.0 514,613 - Shewana3_0440 0.18 -2.9 514,613 - Shewana3_0440 0.18 -1.9 514,713 - Shewana3_0440 0.25 -2.1 514,732 + Shewana3_0440 0.27 -3.5 514,845 + Shewana3_0440 0.36 -3.0 514,853 - Shewana3_0440 0.36 -2.5 514,919 + Shewana3_0440 0.41 -3.7 514,999 - Shewana3_0440 0.47 -2.4 515,103 - Shewana3_0440 0.55 -2.5 515,209 + Shewana3_0440 0.64 -1.8 515,283 + Shewana3_0440 0.69 -2.6 515,291 - Shewana3_0440 0.70 -2.5 515,318 - Shewana3_0440 0.72 -2.7 515,352 - Shewana3_0440 0.75 -3.0 515,366 + Shewana3_0440 0.76 -3.2 515,374 - Shewana3_0440 0.76 -3.6 515,374 - Shewana3_0440 0.76 -3.4 515,425 + Shewana3_0440 0.80 -4.8 515,433 - Shewana3_0440 0.81 -4.4 515,462 + Shewana3_0440 0.83 -2.8 515,516 + Shewana3_0440 0.87 -3.8 515,516 + Shewana3_0440 0.87 -5.5 515,524 - Shewana3_0440 0.88 +0.4 515,524 - Shewana3_0440 0.88 -3.0 515,593 + -4.2 515,593 + -2.1 515,596 - -3.1 515,601 - -2.4 515,603 + -2.2 515,736 - -0.2 515,956 - purH Shewana3_0441 0.11 -3.6 515,983 - purH Shewana3_0441 0.12 -4.4 515,983 - purH Shewana3_0441 0.12 -4.0 515,983 - purH Shewana3_0441 0.12 -3.7 516,165 - purH Shewana3_0441 0.24 -3.3 516,169 + purH Shewana3_0441 0.24 -3.4 516,169 + purH Shewana3_0441 0.24 -4.2 516,169 + purH Shewana3_0441 0.24 -4.2 516,178 - purH Shewana3_0441 0.24 -3.9 516,258 - purH Shewana3_0441 0.29 -4.2 516,388 - purH Shewana3_0441 0.38 -4.6 516,481 + purH Shewana3_0441 0.43 -3.9 516,481 + purH Shewana3_0441 0.43 -5.1 516,491 + purH Shewana3_0441 0.44 -2.9 516,499 + purH Shewana3_0441 0.45 -4.9 516,499 - purH Shewana3_0441 0.45 -5.4 516,499 - purH Shewana3_0441 0.45 -3.9 516,499 - purH Shewana3_0441 0.45 -4.7 516,556 - purH Shewana3_0441 0.48 -4.4 516,566 - purH Shewana3_0441 0.49 -4.6 516,599 + purH Shewana3_0441 0.51 -2.7
Or see this region's nucleotide sequence