Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0429 and Shewana3_0430 are separated by 230 nucleotides Shewana3_0430 and Shewana3_0431 are separated by 211 nucleotides
Shewana3_0429: Shewana3_0429 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 491,659 to 496,122
_0429
Shewana3_0430: Shewana3_0430 - patatin (RefSeq), at 496,353 to 498,572
_0430
Shewana3_0431: Shewana3_0431 - peptidase M13 (RefSeq), at 498,784 to 500,826
_0431
Position (kb) 496
497
498
499 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 495.371 kb on - strand, within Shewana3_0429 at 495.371 kb on - strand, within Shewana3_0429 at 495.385 kb on - strand, within Shewana3_0429 at 495.385 kb on - strand, within Shewana3_0429 at 495.386 kb on + strand, within Shewana3_0429 at 495.481 kb on + strand, within Shewana3_0429 at 495.489 kb on - strand, within Shewana3_0429 at 495.534 kb on + strand, within Shewana3_0429 at 495.608 kb on + strand, within Shewana3_0429 at 495.711 kb on - strand at 495.816 kb on + strand at 496.003 kb on - strand at 496.017 kb on - strand at 496.029 kb on + strand at 496.117 kb on + strand at 496.117 kb on - strand at 496.429 kb on - strand at 496.429 kb on - strand at 496.587 kb on + strand, within Shewana3_0430 at 496.824 kb on + strand, within Shewana3_0430 at 496.914 kb on + strand, within Shewana3_0430 at 496.933 kb on - strand, within Shewana3_0430 at 496.996 kb on - strand, within Shewana3_0430 at 497.006 kb on + strand, within Shewana3_0430 at 497.006 kb on + strand, within Shewana3_0430 at 497.006 kb on + strand, within Shewana3_0430 at 497.073 kb on + strand, within Shewana3_0430 at 497.193 kb on + strand, within Shewana3_0430 at 497.203 kb on + strand, within Shewana3_0430 at 497.225 kb on - strand, within Shewana3_0430 at 497.338 kb on - strand, within Shewana3_0430 at 497.562 kb on + strand, within Shewana3_0430 at 497.570 kb on - strand, within Shewana3_0430 at 497.608 kb on + strand, within Shewana3_0430 at 497.627 kb on + strand, within Shewana3_0430 at 497.660 kb on + strand, within Shewana3_0430 at 497.661 kb on + strand, within Shewana3_0430 at 497.711 kb on + strand, within Shewana3_0430 at 497.834 kb on + strand, within Shewana3_0430 at 497.882 kb on + strand, within Shewana3_0430 at 497.890 kb on - strand, within Shewana3_0430 at 497.897 kb on - strand, within Shewana3_0430 at 497.903 kb on + strand, within Shewana3_0430 at 497.904 kb on + strand, within Shewana3_0430 at 498.001 kb on - strand, within Shewana3_0430 at 498.015 kb on + strand, within Shewana3_0430 at 498.015 kb on + strand, within Shewana3_0430 at 498.034 kb on + strand, within Shewana3_0430 at 498.134 kb on - strand, within Shewana3_0430 at 498.135 kb on + strand, within Shewana3_0430 at 498.135 kb on + strand, within Shewana3_0430 at 498.396 kb on + strand at 498.432 kb on + strand at 498.440 kb on - strand at 498.442 kb on + strand at 498.452 kb on + strand at 499.215 kb on - strand, within Shewana3_0431 at 499.308 kb on + strand, within Shewana3_0431 at 499.308 kb on + strand, within Shewana3_0431 at 499.310 kb on + strand, within Shewana3_0431 at 499.310 kb on + strand, within Shewana3_0431 at 499.318 kb on - strand, within Shewana3_0431 at 499.318 kb on - strand, within Shewana3_0431 at 499.324 kb on + strand, within Shewana3_0431 at 499.558 kb on - strand, within Shewana3_0431
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 495,371 - Shewana3_0429 0.83 -1.5 495,371 - Shewana3_0429 0.83 +0.8 495,385 - Shewana3_0429 0.83 +1.9 495,385 - Shewana3_0429 0.83 +0.1 495,386 + Shewana3_0429 0.83 +0.3 495,481 + Shewana3_0429 0.86 +0.1 495,489 - Shewana3_0429 0.86 +0.3 495,534 + Shewana3_0429 0.87 -1.5 495,608 + Shewana3_0429 0.88 +0.5 495,711 - +1.0 495,816 + +0.8 496,003 - +0.1 496,017 - -0.4 496,029 + -2.5 496,117 + -1.2 496,117 - -0.4 496,429 - +0.4 496,429 - +2.3 496,587 + Shewana3_0430 0.11 +0.4 496,824 + Shewana3_0430 0.21 +0.4 496,914 + Shewana3_0430 0.25 +1.7 496,933 - Shewana3_0430 0.26 +0.7 496,996 - Shewana3_0430 0.29 -2.3 497,006 + Shewana3_0430 0.29 +0.4 497,006 + Shewana3_0430 0.29 +0.4 497,006 + Shewana3_0430 0.29 +0.4 497,073 + Shewana3_0430 0.32 +1.9 497,193 + Shewana3_0430 0.38 +0.5 497,203 + Shewana3_0430 0.38 +0.9 497,225 - Shewana3_0430 0.39 +1.4 497,338 - Shewana3_0430 0.44 -0.9 497,562 + Shewana3_0430 0.54 +0.4 497,570 - Shewana3_0430 0.55 +0.6 497,608 + Shewana3_0430 0.57 +1.3 497,627 + Shewana3_0430 0.57 +1.9 497,660 + Shewana3_0430 0.59 +1.0 497,661 + Shewana3_0430 0.59 +1.1 497,711 + Shewana3_0430 0.61 -0.2 497,834 + Shewana3_0430 0.67 +0.4 497,882 + Shewana3_0430 0.69 +1.2 497,890 - Shewana3_0430 0.69 -0.1 497,897 - Shewana3_0430 0.70 +0.8 497,903 + Shewana3_0430 0.70 +0.6 497,904 + Shewana3_0430 0.70 +2.5 498,001 - Shewana3_0430 0.74 +1.7 498,015 + Shewana3_0430 0.75 +1.1 498,015 + Shewana3_0430 0.75 +1.9 498,034 + Shewana3_0430 0.76 +1.7 498,134 - Shewana3_0430 0.80 +0.1 498,135 + Shewana3_0430 0.80 -0.1 498,135 + Shewana3_0430 0.80 +0.6 498,396 + +1.4 498,432 + +1.3 498,440 - +0.9 498,442 + -0.8 498,452 + +0.9 499,215 - Shewana3_0431 0.21 +0.6 499,308 + Shewana3_0431 0.26 -0.7 499,308 + Shewana3_0431 0.26 -4.4 499,310 + Shewana3_0431 0.26 +0.0 499,310 + Shewana3_0431 0.26 -1.1 499,318 - Shewana3_0431 0.26 +0.1 499,318 - Shewana3_0431 0.26 -0.5 499,324 + Shewana3_0431 0.26 -0.2 499,558 - Shewana3_0431 0.38 +0.4
Or see this region's nucleotide sequence