Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rho and Shewana3_0409 are separated by 211 nucleotides Shewana3_0409 and Shewana3_0410 are separated by 152 nucleotides Shewana3_0410 and Shewana3_0411 are separated by 0 nucleotides
Shewana3_0408: rho - transcription termination factor Rho (RefSeq), at 467,291 to 468,556
rho
Shewana3_0409: Shewana3_0409 - thioredoxin (RefSeq), at 468,768 to 469,094
_0409
Shewana3_0410: Shewana3_0410 - ATP-dependent RNA helicase RhlB (RefSeq), at 469,247 to 470,566
_0410
Shewana3_0411: Shewana3_0411 - Ppx/GppA phosphatase (RefSeq), at 470,567 to 471,493
_0411
Position (kb) 469
470
471 Strain fitness (log2 ratio) -2
-1
0
1 at 468.802 kb on + strand, within Shewana3_0409 at 468.913 kb on + strand, within Shewana3_0409 at 468.956 kb on - strand, within Shewana3_0409 at 469.000 kb on - strand, within Shewana3_0409 at 469.370 kb on + strand at 469.576 kb on - strand, within Shewana3_0410 at 469.589 kb on - strand, within Shewana3_0410 at 469.662 kb on - strand, within Shewana3_0410 at 469.733 kb on + strand, within Shewana3_0410 at 469.811 kb on + strand, within Shewana3_0410 at 470.059 kb on + strand, within Shewana3_0410 at 470.067 kb on - strand, within Shewana3_0410 at 470.067 kb on - strand, within Shewana3_0410 at 470.197 kb on + strand, within Shewana3_0410 at 470.362 kb on + strand, within Shewana3_0410 at 470.385 kb on - strand, within Shewana3_0410 at 470.497 kb on - strand at 470.498 kb on - strand at 470.687 kb on + strand, within Shewana3_0411 at 470.779 kb on + strand, within Shewana3_0411 at 470.787 kb on - strand, within Shewana3_0411 at 470.830 kb on - strand, within Shewana3_0411 at 470.834 kb on + strand, within Shewana3_0411 at 470.834 kb on + strand, within Shewana3_0411 at 470.870 kb on - strand, within Shewana3_0411 at 470.989 kb on + strand, within Shewana3_0411 at 471.041 kb on + strand, within Shewana3_0411 at 471.055 kb on - strand, within Shewana3_0411 at 471.139 kb on + strand, within Shewana3_0411 at 471.140 kb on + strand, within Shewana3_0411 at 471.163 kb on + strand, within Shewana3_0411 at 471.261 kb on + strand, within Shewana3_0411 at 471.280 kb on + strand, within Shewana3_0411 at 471.280 kb on + strand, within Shewana3_0411 at 471.528 kb on + strand at 471.529 kb on + strand at 471.553 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 468,802 + Shewana3_0409 0.10 -0.4 468,913 + Shewana3_0409 0.44 -1.2 468,956 - Shewana3_0409 0.57 +0.4 469,000 - Shewana3_0409 0.71 -0.1 469,370 + -1.7 469,576 - Shewana3_0410 0.25 -1.6 469,589 - Shewana3_0410 0.26 -0.8 469,662 - Shewana3_0410 0.31 -0.4 469,733 + Shewana3_0410 0.37 +0.3 469,811 + Shewana3_0410 0.43 -0.6 470,059 + Shewana3_0410 0.62 -1.3 470,067 - Shewana3_0410 0.62 -0.6 470,067 - Shewana3_0410 0.62 -1.9 470,197 + Shewana3_0410 0.72 -1.4 470,362 + Shewana3_0410 0.84 +0.2 470,385 - Shewana3_0410 0.86 -1.4 470,497 - +0.0 470,498 - -0.1 470,687 + Shewana3_0411 0.13 -0.7 470,779 + Shewana3_0411 0.23 -1.2 470,787 - Shewana3_0411 0.24 +0.8 470,830 - Shewana3_0411 0.28 -0.6 470,834 + Shewana3_0411 0.29 +0.4 470,834 + Shewana3_0411 0.29 -0.1 470,870 - Shewana3_0411 0.33 -0.3 470,989 + Shewana3_0411 0.46 -0.4 471,041 + Shewana3_0411 0.51 -0.5 471,055 - Shewana3_0411 0.53 +0.1 471,139 + Shewana3_0411 0.62 -0.7 471,140 + Shewana3_0411 0.62 -0.3 471,163 + Shewana3_0411 0.64 -0.7 471,261 + Shewana3_0411 0.75 -0.1 471,280 + Shewana3_0411 0.77 +0.2 471,280 + Shewana3_0411 0.77 -0.2 471,528 + -0.9 471,529 + +0.3 471,553 - +0.1
Or see this region's nucleotide sequence