Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0367 and Shewana3_0368 overlap by 4 nucleotides Shewana3_0368 and Shewana3_0369 are separated by 59 nucleotides Shewana3_0369 and Shewana3_0370 are separated by 94 nucleotides Shewana3_0370 and Shewana3_0371 are separated by 116 nucleotides
Shewana3_0367: Shewana3_0367 - hypothetical protein (RefSeq), at 404,045 to 405,211
_0367
Shewana3_0368: Shewana3_0368 - hypothetical protein (RefSeq), at 405,208 to 405,573
_0368
Shewana3_0369: Shewana3_0369 - hypothetical protein (RefSeq), at 405,633 to 405,965
_0369
Shewana3_0370: Shewana3_0370 - hypothetical protein (RefSeq), at 406,060 to 406,314
_0370
Shewana3_0371: Shewana3_0371 - acriflavin resistance protein (RefSeq), at 406,431 to 409,520
_0371
Position (kb) 406
407 Strain fitness (log2 ratio) -1
0
1
2 at 405.317 kb on + strand, within Shewana3_0368 at 405.339 kb on - strand, within Shewana3_0368 at 405.509 kb on + strand, within Shewana3_0368 at 405.638 kb on + strand at 405.818 kb on - strand, within Shewana3_0369 at 405.848 kb on - strand, within Shewana3_0369 at 405.895 kb on - strand, within Shewana3_0369 at 405.895 kb on - strand, within Shewana3_0369 at 405.917 kb on + strand, within Shewana3_0369 at 405.927 kb on + strand, within Shewana3_0369 at 405.935 kb on - strand at 405.935 kb on - strand at 406.187 kb on - strand, within Shewana3_0370 at 406.258 kb on + strand, within Shewana3_0370 at 406.266 kb on - strand, within Shewana3_0370 at 406.702 kb on + strand at 406.702 kb on + strand at 406.979 kb on - strand, within Shewana3_0371 at 407.029 kb on + strand, within Shewana3_0371 at 407.037 kb on - strand, within Shewana3_0371 at 407.281 kb on - strand, within Shewana3_0371 at 407.288 kb on + strand, within Shewana3_0371 at 407.304 kb on + strand, within Shewana3_0371
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 405,317 + Shewana3_0368 0.30 -1.1 405,339 - Shewana3_0368 0.36 +0.2 405,509 + Shewana3_0368 0.82 -0.1 405,638 + +0.8 405,818 - Shewana3_0369 0.56 +0.1 405,848 - Shewana3_0369 0.65 +0.2 405,895 - Shewana3_0369 0.79 -0.9 405,895 - Shewana3_0369 0.79 +0.0 405,917 + Shewana3_0369 0.85 -0.8 405,927 + Shewana3_0369 0.88 -0.3 405,935 - +0.8 405,935 - -0.9 406,187 - Shewana3_0370 0.50 +2.0 406,258 + Shewana3_0370 0.78 -0.0 406,266 - Shewana3_0370 0.81 -0.3 406,702 + +0.1 406,702 + +0.1 406,979 - Shewana3_0371 0.18 -0.8 407,029 + Shewana3_0371 0.19 -0.5 407,037 - Shewana3_0371 0.20 -0.2 407,281 - Shewana3_0371 0.28 -0.1 407,288 + Shewana3_0371 0.28 +0.4 407,304 + Shewana3_0371 0.28 +0.3
Or see this region's nucleotide sequence