Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0356 and ilvM overlap by 4 nucleotides ilvM and Shewana3_0358 are separated by 79 nucleotides Shewana3_0358 and Shewana3_0359 are separated by 1 nucleotides
Shewana3_0356: Shewana3_0356 - acetolactate synthase 2 catalytic subunit (RefSeq), at 392,186 to 393,859
_0356
Shewana3_0357: ilvM - acetolactate synthase 2 regulatory subunit (RefSeq), at 393,856 to 394,116
ilvM
Shewana3_0358: Shewana3_0358 - dihydroxy-acid dehydratase (RefSeq), at 394,196 to 396,055
_0358
Shewana3_0359: Shewana3_0359 - threonine dehydratase (RefSeq), at 396,057 to 397,700
_0359
Position (kb) 394
395
396
397 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 393.298 kb on + strand, within Shewana3_0356 at 393.343 kb on - strand, within Shewana3_0356 at 393.359 kb on + strand, within Shewana3_0356 at 393.391 kb on - strand, within Shewana3_0356 at 393.398 kb on + strand, within Shewana3_0356 at 393.406 kb on - strand, within Shewana3_0356 at 393.406 kb on - strand, within Shewana3_0356 at 393.419 kb on + strand, within Shewana3_0356 at 393.530 kb on - strand, within Shewana3_0356 at 393.672 kb on - strand, within Shewana3_0356 at 393.719 kb on - strand at 393.880 kb on - strand at 393.943 kb on - strand, within ilvM at 394.024 kb on - strand, within ilvM at 394.071 kb on + strand, within ilvM at 394.120 kb on - strand at 394.133 kb on + strand at 394.152 kb on + strand at 394.184 kb on + strand at 394.473 kb on - strand, within Shewana3_0358 at 394.503 kb on + strand, within Shewana3_0358 at 394.643 kb on - strand, within Shewana3_0358 at 394.755 kb on + strand, within Shewana3_0358 at 394.858 kb on + strand, within Shewana3_0358 at 394.916 kb on + strand, within Shewana3_0358 at 394.916 kb on + strand, within Shewana3_0358 at 394.950 kb on + strand, within Shewana3_0358 at 394.985 kb on - strand, within Shewana3_0358 at 395.037 kb on - strand, within Shewana3_0358 at 395.094 kb on + strand, within Shewana3_0358 at 395.128 kb on + strand, within Shewana3_0358 at 395.136 kb on - strand, within Shewana3_0358 at 395.168 kb on + strand, within Shewana3_0358 at 395.215 kb on - strand, within Shewana3_0358 at 395.272 kb on + strand, within Shewana3_0358 at 395.293 kb on + strand, within Shewana3_0358 at 395.301 kb on - strand, within Shewana3_0358 at 395.378 kb on + strand, within Shewana3_0358 at 395.417 kb on + strand, within Shewana3_0358 at 395.424 kb on + strand, within Shewana3_0358 at 395.573 kb on + strand, within Shewana3_0358 at 395.725 kb on - strand, within Shewana3_0358 at 395.730 kb on - strand, within Shewana3_0358 at 395.827 kb on - strand, within Shewana3_0358 at 395.868 kb on + strand, within Shewana3_0358 at 395.874 kb on + strand at 395.882 kb on - strand at 395.900 kb on + strand at 396.089 kb on + strand at 396.089 kb on + strand at 396.097 kb on - strand at 396.186 kb on + strand at 396.293 kb on - strand, within Shewana3_0359 at 396.420 kb on - strand, within Shewana3_0359 at 396.429 kb on - strand, within Shewana3_0359 at 396.522 kb on - strand, within Shewana3_0359 at 396.649 kb on + strand, within Shewana3_0359 at 396.649 kb on + strand, within Shewana3_0359 at 396.864 kb on - strand, within Shewana3_0359
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 393,298 + Shewana3_0356 0.66 -0.7 393,343 - Shewana3_0356 0.69 -4.1 393,359 + Shewana3_0356 0.70 -0.8 393,391 - Shewana3_0356 0.72 -5.3 393,398 + Shewana3_0356 0.72 -1.2 393,406 - Shewana3_0356 0.73 -3.3 393,406 - Shewana3_0356 0.73 -4.3 393,419 + Shewana3_0356 0.74 -1.1 393,530 - Shewana3_0356 0.80 -5.3 393,672 - Shewana3_0356 0.89 -2.8 393,719 - -5.2 393,880 - -2.5 393,943 - ilvM Shewana3_0357 0.33 -5.9 394,024 - ilvM Shewana3_0357 0.64 -5.4 394,071 + ilvM Shewana3_0357 0.82 -0.2 394,120 - -2.8 394,133 + +0.2 394,152 + -2.4 394,184 + -1.3 394,473 - Shewana3_0358 0.15 -4.9 394,503 + Shewana3_0358 0.17 -4.8 394,643 - Shewana3_0358 0.24 -3.2 394,755 + Shewana3_0358 0.30 -3.6 394,858 + Shewana3_0358 0.36 -0.5 394,916 + Shewana3_0358 0.39 -1.5 394,916 + Shewana3_0358 0.39 -2.3 394,950 + Shewana3_0358 0.41 -4.0 394,985 - Shewana3_0358 0.42 -4.1 395,037 - Shewana3_0358 0.45 -2.5 395,094 + Shewana3_0358 0.48 -4.2 395,128 + Shewana3_0358 0.50 -2.3 395,136 - Shewana3_0358 0.51 -2.2 395,168 + Shewana3_0358 0.52 -3.9 395,215 - Shewana3_0358 0.55 -3.7 395,272 + Shewana3_0358 0.58 -4.1 395,293 + Shewana3_0358 0.59 -4.2 395,301 - Shewana3_0358 0.59 -2.7 395,378 + Shewana3_0358 0.64 -4.6 395,417 + Shewana3_0358 0.66 -3.5 395,424 + Shewana3_0358 0.66 -2.3 395,573 + Shewana3_0358 0.74 -2.7 395,725 - Shewana3_0358 0.82 -1.1 395,730 - Shewana3_0358 0.82 -3.6 395,827 - Shewana3_0358 0.88 -5.5 395,868 + Shewana3_0358 0.90 -4.0 395,874 + -1.5 395,882 - -4.9 395,900 + -4.7 396,089 + -5.4 396,089 + -4.5 396,097 - -3.7 396,186 + -2.3 396,293 - Shewana3_0359 0.14 -4.3 396,420 - Shewana3_0359 0.22 -3.5 396,429 - Shewana3_0359 0.23 -0.0 396,522 - Shewana3_0359 0.28 -1.2 396,649 + Shewana3_0359 0.36 -4.3 396,649 + Shewana3_0359 0.36 -2.7 396,864 - Shewana3_0359 0.49 -3.5
Or see this region's nucleotide sequence