Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0355 and Shewana3_0356 are separated by 590 nucleotides Shewana3_0356 and ilvM overlap by 4 nucleotides ilvM and Shewana3_0358 are separated by 79 nucleotides
Shewana3_0355: Shewana3_0355 - ketol-acid reductoisomerase (RefSeq), at 390,117 to 391,595
_0355
Shewana3_0356: Shewana3_0356 - acetolactate synthase 2 catalytic subunit (RefSeq), at 392,186 to 393,859
_0356
Shewana3_0357: ilvM - acetolactate synthase 2 regulatory subunit (RefSeq), at 393,856 to 394,116
ilvM
Shewana3_0358: Shewana3_0358 - dihydroxy-acid dehydratase (RefSeq), at 394,196 to 396,055
_0358
Position (kb) 392
393
394 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 391.216 kb on - strand, within Shewana3_0355 at 391.348 kb on - strand, within Shewana3_0355 at 391.354 kb on + strand, within Shewana3_0355 at 391.363 kb on + strand, within Shewana3_0355 at 391.383 kb on - strand, within Shewana3_0355 at 391.385 kb on + strand, within Shewana3_0355 at 391.442 kb on + strand, within Shewana3_0355 at 391.442 kb on + strand, within Shewana3_0355 at 391.463 kb on - strand at 391.525 kb on + strand at 391.849 kb on - strand at 392.295 kb on + strand at 392.295 kb on + strand at 392.327 kb on + strand at 392.512 kb on + strand, within Shewana3_0356 at 392.573 kb on - strand, within Shewana3_0356 at 392.585 kb on - strand, within Shewana3_0356 at 392.605 kb on + strand, within Shewana3_0356 at 392.639 kb on + strand, within Shewana3_0356 at 392.655 kb on + strand, within Shewana3_0356 at 392.663 kb on - strand, within Shewana3_0356 at 392.668 kb on - strand, within Shewana3_0356 at 392.681 kb on - strand, within Shewana3_0356 at 392.736 kb on + strand, within Shewana3_0356 at 392.753 kb on + strand, within Shewana3_0356 at 392.804 kb on - strand, within Shewana3_0356 at 392.899 kb on + strand, within Shewana3_0356 at 392.973 kb on + strand, within Shewana3_0356 at 392.981 kb on + strand, within Shewana3_0356 at 393.181 kb on - strand, within Shewana3_0356 at 393.298 kb on + strand, within Shewana3_0356 at 393.343 kb on - strand, within Shewana3_0356 at 393.359 kb on + strand, within Shewana3_0356 at 393.391 kb on - strand, within Shewana3_0356 at 393.398 kb on + strand, within Shewana3_0356 at 393.406 kb on - strand, within Shewana3_0356 at 393.406 kb on - strand, within Shewana3_0356 at 393.419 kb on + strand, within Shewana3_0356 at 393.530 kb on - strand, within Shewana3_0356 at 393.672 kb on - strand, within Shewana3_0356 at 393.719 kb on - strand at 393.880 kb on - strand at 393.943 kb on - strand, within ilvM at 394.024 kb on - strand, within ilvM at 394.071 kb on + strand, within ilvM at 394.120 kb on - strand at 394.133 kb on + strand at 394.152 kb on + strand at 394.184 kb on + strand at 394.473 kb on - strand, within Shewana3_0358 at 394.503 kb on + strand, within Shewana3_0358 at 394.643 kb on - strand, within Shewana3_0358 at 394.755 kb on + strand, within Shewana3_0358 at 394.858 kb on + strand, within Shewana3_0358
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 391,216 - Shewana3_0355 0.74 -3.9 391,348 - Shewana3_0355 0.83 -2.9 391,354 + Shewana3_0355 0.84 -1.7 391,363 + Shewana3_0355 0.84 -4.6 391,383 - Shewana3_0355 0.86 -2.7 391,385 + Shewana3_0355 0.86 -1.2 391,442 + Shewana3_0355 0.90 -3.1 391,442 + Shewana3_0355 0.90 -3.1 391,463 - -3.6 391,525 + -5.3 391,849 - -4.4 392,295 + -4.9 392,295 + -4.2 392,327 + -3.6 392,512 + Shewana3_0356 0.19 -3.1 392,573 - Shewana3_0356 0.23 -0.8 392,585 - Shewana3_0356 0.24 -4.9 392,605 + Shewana3_0356 0.25 -3.2 392,639 + Shewana3_0356 0.27 -3.6 392,655 + Shewana3_0356 0.28 -2.5 392,663 - Shewana3_0356 0.28 -3.7 392,668 - Shewana3_0356 0.29 -1.2 392,681 - Shewana3_0356 0.30 -4.2 392,736 + Shewana3_0356 0.33 +1.0 392,753 + Shewana3_0356 0.34 -1.2 392,804 - Shewana3_0356 0.37 -4.5 392,899 + Shewana3_0356 0.43 -5.3 392,973 + Shewana3_0356 0.47 -2.5 392,981 + Shewana3_0356 0.47 -2.3 393,181 - Shewana3_0356 0.59 -4.5 393,298 + Shewana3_0356 0.66 -0.7 393,343 - Shewana3_0356 0.69 -4.1 393,359 + Shewana3_0356 0.70 -0.8 393,391 - Shewana3_0356 0.72 -5.3 393,398 + Shewana3_0356 0.72 -1.2 393,406 - Shewana3_0356 0.73 -3.3 393,406 - Shewana3_0356 0.73 -4.3 393,419 + Shewana3_0356 0.74 -1.1 393,530 - Shewana3_0356 0.80 -5.3 393,672 - Shewana3_0356 0.89 -2.8 393,719 - -5.2 393,880 - -2.5 393,943 - ilvM Shewana3_0357 0.33 -5.9 394,024 - ilvM Shewana3_0357 0.64 -5.4 394,071 + ilvM Shewana3_0357 0.82 -0.2 394,120 - -2.8 394,133 + +0.2 394,152 + -2.4 394,184 + -1.3 394,473 - Shewana3_0358 0.15 -4.9 394,503 + Shewana3_0358 0.17 -4.8 394,643 - Shewana3_0358 0.24 -3.2 394,755 + Shewana3_0358 0.30 -3.6 394,858 + Shewana3_0358 0.36 -0.5
Or see this region's nucleotide sequence