Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0354 and Shewana3_0355 are separated by 196 nucleotides Shewana3_0355 and Shewana3_0356 are separated by 590 nucleotides
Shewana3_0354: Shewana3_0354 - DNA-binding transcriptional regulator IlvY (RefSeq), at 389,048 to 389,920
_0354
Shewana3_0355: Shewana3_0355 - ketol-acid reductoisomerase (RefSeq), at 390,117 to 391,595
_0355
Shewana3_0356: Shewana3_0356 - acetolactate synthase 2 catalytic subunit (RefSeq), at 392,186 to 393,859
_0356
Position (kb) 390
391
392 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 389.199 kb on - strand, within Shewana3_0354 at 389.217 kb on - strand, within Shewana3_0354 at 389.288 kb on - strand, within Shewana3_0354 at 389.399 kb on + strand, within Shewana3_0354 at 389.407 kb on - strand, within Shewana3_0354 at 389.433 kb on + strand, within Shewana3_0354 at 389.689 kb on - strand, within Shewana3_0354 at 389.716 kb on - strand, within Shewana3_0354 at 389.747 kb on + strand, within Shewana3_0354 at 389.755 kb on - strand, within Shewana3_0354 at 389.878 kb on - strand at 390.281 kb on - strand, within Shewana3_0355 at 390.396 kb on - strand, within Shewana3_0355 at 390.448 kb on + strand, within Shewana3_0355 at 390.458 kb on + strand, within Shewana3_0355 at 390.466 kb on - strand, within Shewana3_0355 at 390.675 kb on + strand, within Shewana3_0355 at 390.676 kb on + strand, within Shewana3_0355 at 390.684 kb on - strand, within Shewana3_0355 at 390.711 kb on + strand, within Shewana3_0355 at 390.816 kb on + strand, within Shewana3_0355 at 390.824 kb on - strand, within Shewana3_0355 at 390.824 kb on - strand, within Shewana3_0355 at 390.855 kb on - strand, within Shewana3_0355 at 390.947 kb on + strand, within Shewana3_0355 at 391.002 kb on + strand, within Shewana3_0355 at 391.095 kb on - strand, within Shewana3_0355 at 391.149 kb on - strand, within Shewana3_0355 at 391.216 kb on - strand, within Shewana3_0355 at 391.348 kb on - strand, within Shewana3_0355 at 391.354 kb on + strand, within Shewana3_0355 at 391.363 kb on + strand, within Shewana3_0355 at 391.383 kb on - strand, within Shewana3_0355 at 391.385 kb on + strand, within Shewana3_0355 at 391.442 kb on + strand, within Shewana3_0355 at 391.442 kb on + strand, within Shewana3_0355 at 391.463 kb on - strand at 391.525 kb on + strand at 391.849 kb on - strand at 392.295 kb on + strand at 392.295 kb on + strand at 392.327 kb on + strand at 392.512 kb on + strand, within Shewana3_0356 at 392.573 kb on - strand, within Shewana3_0356 at 392.585 kb on - strand, within Shewana3_0356
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 389,199 - Shewana3_0354 0.17 -3.8 389,217 - Shewana3_0354 0.19 -4.4 389,288 - Shewana3_0354 0.27 -3.5 389,399 + Shewana3_0354 0.40 -2.6 389,407 - Shewana3_0354 0.41 -3.8 389,433 + Shewana3_0354 0.44 -5.1 389,689 - Shewana3_0354 0.73 -3.0 389,716 - Shewana3_0354 0.77 -3.6 389,747 + Shewana3_0354 0.80 -2.0 389,755 - Shewana3_0354 0.81 -4.1 389,878 - -3.7 390,281 - Shewana3_0355 0.11 -3.1 390,396 - Shewana3_0355 0.19 -2.8 390,448 + Shewana3_0355 0.22 -3.9 390,458 + Shewana3_0355 0.23 -3.4 390,466 - Shewana3_0355 0.24 -3.0 390,675 + Shewana3_0355 0.38 -4.0 390,676 + Shewana3_0355 0.38 -1.9 390,684 - Shewana3_0355 0.38 -4.9 390,711 + Shewana3_0355 0.40 -4.9 390,816 + Shewana3_0355 0.47 -5.1 390,824 - Shewana3_0355 0.48 -4.3 390,824 - Shewana3_0355 0.48 -4.7 390,855 - Shewana3_0355 0.50 -2.1 390,947 + Shewana3_0355 0.56 -3.5 391,002 + Shewana3_0355 0.60 -4.3 391,095 - Shewana3_0355 0.66 -3.8 391,149 - Shewana3_0355 0.70 -3.9 391,216 - Shewana3_0355 0.74 -3.9 391,348 - Shewana3_0355 0.83 -2.9 391,354 + Shewana3_0355 0.84 -1.7 391,363 + Shewana3_0355 0.84 -4.6 391,383 - Shewana3_0355 0.86 -2.7 391,385 + Shewana3_0355 0.86 -1.2 391,442 + Shewana3_0355 0.90 -3.1 391,442 + Shewana3_0355 0.90 -3.1 391,463 - -3.6 391,525 + -5.3 391,849 - -4.4 392,295 + -4.9 392,295 + -4.2 392,327 + -3.6 392,512 + Shewana3_0356 0.19 -3.1 392,573 - Shewana3_0356 0.23 -0.8 392,585 - Shewana3_0356 0.24 -4.9
Or see this region's nucleotide sequence