Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0353 and Shewana3_0354 are separated by 59 nucleotides Shewana3_0354 and Shewana3_0355 are separated by 196 nucleotides
Shewana3_0353: Shewana3_0353 - hypothetical protein (RefSeq), at 387,672 to 388,988
_0353
Shewana3_0354: Shewana3_0354 - DNA-binding transcriptional regulator IlvY (RefSeq), at 389,048 to 389,920
_0354
Shewana3_0355: Shewana3_0355 - ketol-acid reductoisomerase (RefSeq), at 390,117 to 391,595
_0355
Position (kb) 389
390 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 388.177 kb on + strand, within Shewana3_0353 at 388.177 kb on + strand, within Shewana3_0353 at 388.177 kb on + strand, within Shewana3_0353 at 388.246 kb on - strand, within Shewana3_0353 at 388.457 kb on - strand, within Shewana3_0353 at 388.457 kb on - strand, within Shewana3_0353 at 388.552 kb on + strand, within Shewana3_0353 at 388.552 kb on + strand, within Shewana3_0353 at 388.552 kb on + strand, within Shewana3_0353 at 388.552 kb on + strand, within Shewana3_0353 at 388.552 kb on + strand, within Shewana3_0353 at 388.560 kb on - strand, within Shewana3_0353 at 388.560 kb on - strand, within Shewana3_0353 at 388.560 kb on - strand, within Shewana3_0353 at 388.835 kb on - strand, within Shewana3_0353 at 388.985 kb on - strand at 389.099 kb on - strand at 389.199 kb on - strand, within Shewana3_0354 at 389.217 kb on - strand, within Shewana3_0354 at 389.288 kb on - strand, within Shewana3_0354 at 389.399 kb on + strand, within Shewana3_0354 at 389.407 kb on - strand, within Shewana3_0354 at 389.433 kb on + strand, within Shewana3_0354 at 389.689 kb on - strand, within Shewana3_0354 at 389.716 kb on - strand, within Shewana3_0354 at 389.747 kb on + strand, within Shewana3_0354 at 389.755 kb on - strand, within Shewana3_0354 at 389.878 kb on - strand at 390.281 kb on - strand, within Shewana3_0355 at 390.396 kb on - strand, within Shewana3_0355 at 390.448 kb on + strand, within Shewana3_0355 at 390.458 kb on + strand, within Shewana3_0355 at 390.466 kb on - strand, within Shewana3_0355 at 390.675 kb on + strand, within Shewana3_0355 at 390.676 kb on + strand, within Shewana3_0355 at 390.684 kb on - strand, within Shewana3_0355 at 390.711 kb on + strand, within Shewana3_0355 at 390.816 kb on + strand, within Shewana3_0355 at 390.824 kb on - strand, within Shewana3_0355 at 390.824 kb on - strand, within Shewana3_0355 at 390.855 kb on - strand, within Shewana3_0355
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 388,177 + Shewana3_0353 0.38 +0.6 388,177 + Shewana3_0353 0.38 +0.1 388,177 + Shewana3_0353 0.38 +0.8 388,246 - Shewana3_0353 0.44 +2.0 388,457 - Shewana3_0353 0.60 -1.6 388,457 - Shewana3_0353 0.60 +0.5 388,552 + Shewana3_0353 0.67 -0.7 388,552 + Shewana3_0353 0.67 +0.4 388,552 + Shewana3_0353 0.67 +0.1 388,552 + Shewana3_0353 0.67 -0.5 388,552 + Shewana3_0353 0.67 -0.5 388,560 - Shewana3_0353 0.67 -0.1 388,560 - Shewana3_0353 0.67 -0.9 388,560 - Shewana3_0353 0.67 +0.9 388,835 - Shewana3_0353 0.88 +0.1 388,985 - -0.1 389,099 - -3.6 389,199 - Shewana3_0354 0.17 -3.8 389,217 - Shewana3_0354 0.19 -4.4 389,288 - Shewana3_0354 0.27 -3.5 389,399 + Shewana3_0354 0.40 -2.6 389,407 - Shewana3_0354 0.41 -3.8 389,433 + Shewana3_0354 0.44 -5.1 389,689 - Shewana3_0354 0.73 -3.0 389,716 - Shewana3_0354 0.77 -3.6 389,747 + Shewana3_0354 0.80 -2.0 389,755 - Shewana3_0354 0.81 -4.1 389,878 - -3.7 390,281 - Shewana3_0355 0.11 -3.1 390,396 - Shewana3_0355 0.19 -2.8 390,448 + Shewana3_0355 0.22 -3.9 390,458 + Shewana3_0355 0.23 -3.4 390,466 - Shewana3_0355 0.24 -3.0 390,675 + Shewana3_0355 0.38 -4.0 390,676 + Shewana3_0355 0.38 -1.9 390,684 - Shewana3_0355 0.38 -4.9 390,711 + Shewana3_0355 0.40 -4.9 390,816 + Shewana3_0355 0.47 -5.1 390,824 - Shewana3_0355 0.48 -4.3 390,824 - Shewana3_0355 0.48 -4.7 390,855 - Shewana3_0355 0.50 -2.1
Or see this region's nucleotide sequence