Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0301 and Shewana3_0302 are separated by 85 nucleotides Shewana3_0302 and Shewana3_0303 are separated by 138 nucleotides Shewana3_0303 and Shewana3_0304 are separated by 44 nucleotides
Shewana3_0301: Shewana3_0301 - GTP-binding protein TypA (RefSeq), at 336,865 to 338,676
_0301
Shewana3_0302: Shewana3_0302 - AraC family transcriptional regulator (RefSeq), at 338,762 to 339,769
_0302
Shewana3_0303: Shewana3_0303 - short-chain dehydrogenase/reductase SDR (RefSeq), at 339,908 to 340,669
_0303
Shewana3_0304: Shewana3_0304 - hypothetical protein (RefSeq), at 340,714 to 341,220
_0304
Position (kb) 338
339
340 Strain fitness (log2 ratio) -2
-1
0
1 at 337.889 kb on + strand, within Shewana3_0301 at 337.890 kb on - strand, within Shewana3_0301 at 337.919 kb on + strand, within Shewana3_0301 at 337.959 kb on - strand, within Shewana3_0301 at 337.969 kb on - strand, within Shewana3_0301 at 338.185 kb on - strand, within Shewana3_0301 at 338.234 kb on - strand, within Shewana3_0301 at 338.251 kb on + strand, within Shewana3_0301 at 338.259 kb on - strand, within Shewana3_0301 at 338.375 kb on - strand, within Shewana3_0301 at 338.557 kb on - strand at 338.567 kb on + strand at 338.641 kb on + strand at 338.709 kb on - strand at 338.715 kb on + strand at 338.960 kb on + strand, within Shewana3_0302 at 338.960 kb on + strand, within Shewana3_0302 at 338.968 kb on - strand, within Shewana3_0302 at 338.978 kb on - strand, within Shewana3_0302 at 339.008 kb on + strand, within Shewana3_0302 at 339.027 kb on - strand, within Shewana3_0302 at 339.045 kb on + strand, within Shewana3_0302 at 339.182 kb on - strand, within Shewana3_0302 at 339.189 kb on + strand, within Shewana3_0302 at 339.189 kb on + strand, within Shewana3_0302 at 339.206 kb on + strand, within Shewana3_0302 at 339.243 kb on - strand, within Shewana3_0302 at 339.271 kb on - strand, within Shewana3_0302 at 339.381 kb on - strand, within Shewana3_0302 at 339.594 kb on - strand, within Shewana3_0302 at 339.900 kb on + strand at 339.906 kb on - strand at 339.913 kb on - strand at 339.919 kb on + strand at 340.102 kb on + strand, within Shewana3_0303 at 340.297 kb on - strand, within Shewana3_0303 at 340.297 kb on - strand, within Shewana3_0303 at 340.352 kb on - strand, within Shewana3_0303 at 340.424 kb on - strand, within Shewana3_0303 at 340.470 kb on + strand, within Shewana3_0303 at 340.470 kb on + strand, within Shewana3_0303 at 340.470 kb on + strand, within Shewana3_0303 at 340.470 kb on + strand, within Shewana3_0303 at 340.472 kb on + strand, within Shewana3_0303 at 340.485 kb on + strand, within Shewana3_0303 at 340.523 kb on + strand, within Shewana3_0303 at 340.634 kb on - strand at 340.680 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 337,889 + Shewana3_0301 0.57 -0.7 337,890 - Shewana3_0301 0.57 +0.2 337,919 + Shewana3_0301 0.58 -1.2 337,959 - Shewana3_0301 0.60 -0.4 337,969 - Shewana3_0301 0.61 +0.1 338,185 - Shewana3_0301 0.73 -0.2 338,234 - Shewana3_0301 0.76 -0.1 338,251 + Shewana3_0301 0.76 -2.5 338,259 - Shewana3_0301 0.77 -1.2 338,375 - Shewana3_0301 0.83 -0.8 338,557 - -1.4 338,567 + +0.3 338,641 + -0.6 338,709 - +0.2 338,715 + +0.4 338,960 + Shewana3_0302 0.20 -0.2 338,960 + Shewana3_0302 0.20 +0.5 338,968 - Shewana3_0302 0.20 +0.3 338,978 - Shewana3_0302 0.21 +0.3 339,008 + Shewana3_0302 0.24 +0.9 339,027 - Shewana3_0302 0.26 +0.4 339,045 + Shewana3_0302 0.28 +0.5 339,182 - Shewana3_0302 0.42 +0.9 339,189 + Shewana3_0302 0.42 -0.1 339,189 + Shewana3_0302 0.42 +1.1 339,206 + Shewana3_0302 0.44 +1.2 339,243 - Shewana3_0302 0.48 +0.8 339,271 - Shewana3_0302 0.50 +0.7 339,381 - Shewana3_0302 0.61 +0.4 339,594 - Shewana3_0302 0.83 -0.2 339,900 + -0.8 339,906 - -0.7 339,913 - -0.1 339,919 + +0.9 340,102 + Shewana3_0303 0.25 +0.5 340,297 - Shewana3_0303 0.51 -1.0 340,297 - Shewana3_0303 0.51 +0.0 340,352 - Shewana3_0303 0.58 +1.1 340,424 - Shewana3_0303 0.68 +1.4 340,470 + Shewana3_0303 0.74 -0.3 340,470 + Shewana3_0303 0.74 +0.5 340,470 + Shewana3_0303 0.74 -0.1 340,470 + Shewana3_0303 0.74 +0.9 340,472 + Shewana3_0303 0.74 +0.1 340,485 + Shewana3_0303 0.76 -0.0 340,523 + Shewana3_0303 0.81 +0.5 340,634 - +0.4 340,680 + +0.3
Or see this region's nucleotide sequence