Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0299 and glnA are separated by 407 nucleotides glnA and Shewana3_0301 are separated by 985 nucleotides
Shewana3_0299: Shewana3_0299 - TonB-dependent siderophore receptor (RefSeq), at 331,825 to 334,062
_0299
Shewana3_0300: glnA - glutamine synthetase (RefSeq), at 334,470 to 335,879
glnA
Shewana3_0301: Shewana3_0301 - GTP-binding protein TypA (RefSeq), at 336,865 to 338,676
_0301
Position (kb) 334
335
336 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 333.558 kb on - strand, within Shewana3_0299 at 333.683 kb on - strand, within Shewana3_0299 at 333.683 kb on - strand, within Shewana3_0299 at 333.899 kb on + strand at 333.908 kb on + strand at 334.029 kb on + strand at 334.052 kb on + strand at 334.060 kb on - strand at 334.090 kb on + strand at 334.098 kb on + strand at 334.106 kb on - strand at 334.118 kb on - strand at 334.339 kb on - strand at 334.354 kb on - strand at 334.361 kb on - strand at 334.477 kb on + strand at 334.549 kb on + strand at 334.789 kb on - strand, within glnA at 334.871 kb on - strand, within glnA at 334.933 kb on - strand, within glnA at 334.984 kb on + strand, within glnA at 334.984 kb on + strand, within glnA at 335.044 kb on - strand, within glnA at 335.134 kb on + strand, within glnA at 335.145 kb on + strand, within glnA at 335.145 kb on + strand, within glnA at 335.145 kb on + strand, within glnA at 335.153 kb on - strand, within glnA at 335.153 kb on - strand, within glnA at 335.153 kb on - strand, within glnA at 335.319 kb on + strand, within glnA at 335.332 kb on + strand, within glnA at 335.340 kb on - strand, within glnA at 335.371 kb on + strand, within glnA at 335.455 kb on - strand, within glnA at 335.475 kb on - strand, within glnA at 335.501 kb on + strand, within glnA at 335.507 kb on - strand, within glnA at 335.582 kb on - strand, within glnA at 335.624 kb on - strand, within glnA at 335.654 kb on - strand, within glnA at 335.808 kb on - strand at 335.817 kb on + strand at 336.057 kb on - strand at 336.112 kb on - strand at 336.127 kb on + strand at 336.137 kb on - strand at 336.137 kb on - strand at 336.185 kb on - strand at 336.265 kb on + strand at 336.299 kb on + strand at 336.336 kb on + strand at 336.448 kb on + strand at 336.497 kb on - strand at 336.555 kb on + strand at 336.683 kb on + strand at 336.767 kb on + strand at 336.855 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 333,558 - Shewana3_0299 0.77 +0.3 333,683 - Shewana3_0299 0.83 -0.2 333,683 - Shewana3_0299 0.83 -0.4 333,899 + -0.7 333,908 + -0.0 334,029 + +0.8 334,052 + -1.2 334,060 - -1.2 334,090 + -0.6 334,098 + -0.3 334,106 - +1.0 334,118 - -0.4 334,339 - -0.9 334,354 - +0.4 334,361 - +0.5 334,477 + -3.2 334,549 + -0.3 334,789 - glnA Shewana3_0300 0.23 -0.8 334,871 - glnA Shewana3_0300 0.28 -3.5 334,933 - glnA Shewana3_0300 0.33 -3.4 334,984 + glnA Shewana3_0300 0.36 +1.0 334,984 + glnA Shewana3_0300 0.36 -2.1 335,044 - glnA Shewana3_0300 0.41 -1.0 335,134 + glnA Shewana3_0300 0.47 -1.1 335,145 + glnA Shewana3_0300 0.48 -1.3 335,145 + glnA Shewana3_0300 0.48 -1.1 335,145 + glnA Shewana3_0300 0.48 +0.0 335,153 - glnA Shewana3_0300 0.48 -2.1 335,153 - glnA Shewana3_0300 0.48 -1.0 335,153 - glnA Shewana3_0300 0.48 -2.9 335,319 + glnA Shewana3_0300 0.60 -1.7 335,332 + glnA Shewana3_0300 0.61 -1.4 335,340 - glnA Shewana3_0300 0.62 -2.5 335,371 + glnA Shewana3_0300 0.64 -0.5 335,455 - glnA Shewana3_0300 0.70 -3.4 335,475 - glnA Shewana3_0300 0.71 -4.2 335,501 + glnA Shewana3_0300 0.73 -2.7 335,507 - glnA Shewana3_0300 0.74 -2.1 335,582 - glnA Shewana3_0300 0.79 +0.5 335,624 - glnA Shewana3_0300 0.82 -3.5 335,654 - glnA Shewana3_0300 0.84 -3.3 335,808 - -2.1 335,817 + -1.9 336,057 - -4.3 336,112 - +0.8 336,127 + -1.6 336,137 - -0.8 336,137 - -0.3 336,185 - -1.0 336,265 + -0.1 336,299 + -0.8 336,336 + -0.8 336,448 + +0.1 336,497 - -0.4 336,555 + +0.9 336,683 + +0.3 336,767 + -0.4 336,855 + -0.2
Or see this region's nucleotide sequence