Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0297 and Shewana3_0298 are separated by 389 nucleotides Shewana3_0298 and Shewana3_0299 are separated by 59 nucleotides Shewana3_0299 and glnA are separated by 407 nucleotides
Shewana3_0297: Shewana3_0297 - sodium:dicarboxylate symporter (RefSeq), at 329,865 to 331,109
_0297
Shewana3_0298: Shewana3_0298 - hypothetical protein (RefSeq), at 331,499 to 331,765
_0298
Shewana3_0299: Shewana3_0299 - TonB-dependent siderophore receptor (RefSeq), at 331,825 to 334,062
_0299
Shewana3_0300: glnA - glutamine synthetase (RefSeq), at 334,470 to 335,879
glnA
Position (kb) 331
332
333
334
335 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 330.945 kb on + strand, within Shewana3_0297 at 330.971 kb on + strand, within Shewana3_0297 at 331.113 kb on - strand at 331.144 kb on + strand at 331.157 kb on - strand at 331.162 kb on - strand at 331.252 kb on - strand at 331.325 kb on + strand at 331.330 kb on + strand at 331.357 kb on - strand at 331.363 kb on + strand at 331.611 kb on + strand, within Shewana3_0298 at 331.619 kb on - strand, within Shewana3_0298 at 331.821 kb on + strand at 331.829 kb on - strand at 332.106 kb on - strand, within Shewana3_0299 at 332.150 kb on + strand, within Shewana3_0299 at 332.158 kb on + strand, within Shewana3_0299 at 332.164 kb on + strand, within Shewana3_0299 at 332.270 kb on + strand, within Shewana3_0299 at 332.297 kb on - strand, within Shewana3_0299 at 332.334 kb on - strand, within Shewana3_0299 at 332.383 kb on + strand, within Shewana3_0299 at 332.432 kb on - strand, within Shewana3_0299 at 332.680 kb on - strand, within Shewana3_0299 at 332.680 kb on - strand, within Shewana3_0299 at 332.680 kb on - strand, within Shewana3_0299 at 332.714 kb on - strand, within Shewana3_0299 at 332.857 kb on - strand, within Shewana3_0299 at 332.951 kb on + strand, within Shewana3_0299 at 332.951 kb on + strand, within Shewana3_0299 at 332.971 kb on + strand, within Shewana3_0299 at 333.019 kb on + strand, within Shewana3_0299 at 333.207 kb on - strand, within Shewana3_0299 at 333.243 kb on - strand, within Shewana3_0299 at 333.260 kb on + strand, within Shewana3_0299 at 333.260 kb on + strand, within Shewana3_0299 at 333.268 kb on - strand, within Shewana3_0299 at 333.268 kb on - strand, within Shewana3_0299 at 333.309 kb on - strand, within Shewana3_0299 at 333.469 kb on - strand, within Shewana3_0299 at 333.558 kb on - strand, within Shewana3_0299 at 333.683 kb on - strand, within Shewana3_0299 at 333.683 kb on - strand, within Shewana3_0299 at 333.899 kb on + strand at 333.908 kb on + strand at 334.029 kb on + strand at 334.052 kb on + strand at 334.060 kb on - strand at 334.090 kb on + strand at 334.098 kb on + strand at 334.106 kb on - strand at 334.118 kb on - strand at 334.339 kb on - strand at 334.354 kb on - strand at 334.361 kb on - strand at 334.477 kb on + strand at 334.549 kb on + strand at 334.789 kb on - strand, within glnA at 334.871 kb on - strand, within glnA at 334.933 kb on - strand, within glnA at 334.984 kb on + strand, within glnA at 334.984 kb on + strand, within glnA at 335.044 kb on - strand, within glnA
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 330,945 + Shewana3_0297 0.87 -3.7 330,971 + Shewana3_0297 0.89 -0.6 331,113 - +0.0 331,144 + -1.0 331,157 - +0.9 331,162 - +1.2 331,252 - -0.3 331,325 + -0.3 331,330 + -0.6 331,357 - -0.4 331,363 + +0.2 331,611 + Shewana3_0298 0.42 -0.7 331,619 - Shewana3_0298 0.45 +0.3 331,821 + +0.9 331,829 - +0.7 332,106 - Shewana3_0299 0.13 -0.2 332,150 + Shewana3_0299 0.15 +0.5 332,158 + Shewana3_0299 0.15 +0.0 332,164 + Shewana3_0299 0.15 -0.6 332,270 + Shewana3_0299 0.20 -0.1 332,297 - Shewana3_0299 0.21 +0.0 332,334 - Shewana3_0299 0.23 -0.8 332,383 + Shewana3_0299 0.25 +0.3 332,432 - Shewana3_0299 0.27 +0.8 332,680 - Shewana3_0299 0.38 -0.7 332,680 - Shewana3_0299 0.38 -0.6 332,680 - Shewana3_0299 0.38 -0.6 332,714 - Shewana3_0299 0.40 +0.2 332,857 - Shewana3_0299 0.46 +0.1 332,951 + Shewana3_0299 0.50 -1.2 332,951 + Shewana3_0299 0.50 -1.4 332,971 + Shewana3_0299 0.51 -0.0 333,019 + Shewana3_0299 0.53 -0.0 333,207 - Shewana3_0299 0.62 +0.8 333,243 - Shewana3_0299 0.63 -0.3 333,260 + Shewana3_0299 0.64 -0.0 333,260 + Shewana3_0299 0.64 +0.7 333,268 - Shewana3_0299 0.64 +0.8 333,268 - Shewana3_0299 0.64 +0.2 333,309 - Shewana3_0299 0.66 +0.0 333,469 - Shewana3_0299 0.73 +0.4 333,558 - Shewana3_0299 0.77 +0.3 333,683 - Shewana3_0299 0.83 -0.2 333,683 - Shewana3_0299 0.83 -0.4 333,899 + -0.7 333,908 + -0.0 334,029 + +0.8 334,052 + -1.2 334,060 - -1.2 334,090 + -0.6 334,098 + -0.3 334,106 - +1.0 334,118 - -0.4 334,339 - -0.9 334,354 - +0.4 334,361 - +0.5 334,477 + -3.2 334,549 + -0.3 334,789 - glnA Shewana3_0300 0.23 -0.8 334,871 - glnA Shewana3_0300 0.28 -3.5 334,933 - glnA Shewana3_0300 0.33 -3.4 334,984 + glnA Shewana3_0300 0.36 +1.0 334,984 + glnA Shewana3_0300 0.36 -2.1 335,044 - glnA Shewana3_0300 0.41 -1.0
Or see this region's nucleotide sequence