Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0295 and Shewana3_0296 are separated by 135 nucleotides Shewana3_0296 and Shewana3_0297 are separated by 184 nucleotides Shewana3_0297 and Shewana3_0298 are separated by 389 nucleotides Shewana3_0298 and Shewana3_0299 are separated by 59 nucleotides
Shewana3_0295: Shewana3_0295 - aminotransferase, class V (RefSeq), at 328,100 to 329,221
_0295
Shewana3_0296: Shewana3_0296 - hypothetical protein (RefSeq), at 329,357 to 329,680
_0296
Shewana3_0297: Shewana3_0297 - sodium:dicarboxylate symporter (RefSeq), at 329,865 to 331,109
_0297
Shewana3_0298: Shewana3_0298 - hypothetical protein (RefSeq), at 331,499 to 331,765
_0298
Shewana3_0299: Shewana3_0299 - TonB-dependent siderophore receptor (RefSeq), at 331,825 to 334,062
_0299
Position (kb) 329
330
331
332 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 328.892 kb on - strand, within Shewana3_0295 at 328.928 kb on + strand, within Shewana3_0295 at 329.136 kb on + strand at 329.172 kb on - strand at 329.200 kb on + strand at 329.241 kb on - strand at 329.404 kb on + strand, within Shewana3_0296 at 329.404 kb on + strand, within Shewana3_0296 at 329.404 kb on + strand, within Shewana3_0296 at 329.665 kb on + strand at 329.670 kb on + strand at 329.724 kb on - strand at 329.787 kb on + strand at 329.884 kb on + strand at 330.003 kb on + strand, within Shewana3_0297 at 330.003 kb on + strand, within Shewana3_0297 at 330.003 kb on + strand, within Shewana3_0297 at 330.003 kb on + strand, within Shewana3_0297 at 330.011 kb on - strand, within Shewana3_0297 at 330.043 kb on - strand, within Shewana3_0297 at 330.071 kb on - strand, within Shewana3_0297 at 330.077 kb on + strand, within Shewana3_0297 at 330.077 kb on + strand, within Shewana3_0297 at 330.085 kb on - strand, within Shewana3_0297 at 330.085 kb on - strand, within Shewana3_0297 at 330.134 kb on - strand, within Shewana3_0297 at 330.161 kb on - strand, within Shewana3_0297 at 330.262 kb on - strand, within Shewana3_0297 at 330.566 kb on - strand, within Shewana3_0297 at 330.700 kb on + strand, within Shewana3_0297 at 330.753 kb on + strand, within Shewana3_0297 at 330.763 kb on + strand, within Shewana3_0297 at 330.945 kb on + strand, within Shewana3_0297 at 330.971 kb on + strand, within Shewana3_0297 at 331.113 kb on - strand at 331.144 kb on + strand at 331.157 kb on - strand at 331.162 kb on - strand at 331.252 kb on - strand at 331.325 kb on + strand at 331.330 kb on + strand at 331.357 kb on - strand at 331.363 kb on + strand at 331.611 kb on + strand, within Shewana3_0298 at 331.619 kb on - strand, within Shewana3_0298 at 331.821 kb on + strand at 331.829 kb on - strand at 332.106 kb on - strand, within Shewana3_0299
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 328,892 - Shewana3_0295 0.71 +0.3 328,928 + Shewana3_0295 0.74 -0.6 329,136 + -1.3 329,172 - -0.0 329,200 + -0.6 329,241 - +0.1 329,404 + Shewana3_0296 0.15 +0.1 329,404 + Shewana3_0296 0.15 -0.8 329,404 + Shewana3_0296 0.15 -0.7 329,665 + +0.4 329,670 + +0.7 329,724 - +0.5 329,787 + -0.8 329,884 + +1.2 330,003 + Shewana3_0297 0.11 -1.0 330,003 + Shewana3_0297 0.11 +0.2 330,003 + Shewana3_0297 0.11 +0.0 330,003 + Shewana3_0297 0.11 -1.0 330,011 - Shewana3_0297 0.12 -0.6 330,043 - Shewana3_0297 0.14 +0.3 330,071 - Shewana3_0297 0.17 -0.4 330,077 + Shewana3_0297 0.17 +0.3 330,077 + Shewana3_0297 0.17 -0.9 330,085 - Shewana3_0297 0.18 +0.5 330,085 - Shewana3_0297 0.18 -0.6 330,134 - Shewana3_0297 0.22 -0.0 330,161 - Shewana3_0297 0.24 -0.7 330,262 - Shewana3_0297 0.32 -0.8 330,566 - Shewana3_0297 0.56 -1.2 330,700 + Shewana3_0297 0.67 +0.7 330,753 + Shewana3_0297 0.71 +0.2 330,763 + Shewana3_0297 0.72 +0.3 330,945 + Shewana3_0297 0.87 -3.7 330,971 + Shewana3_0297 0.89 -0.6 331,113 - +0.0 331,144 + -1.0 331,157 - +0.9 331,162 - +1.2 331,252 - -0.3 331,325 + -0.3 331,330 + -0.6 331,357 - -0.4 331,363 + +0.2 331,611 + Shewana3_0298 0.42 -0.7 331,619 - Shewana3_0298 0.45 +0.3 331,821 + +0.9 331,829 - +0.7 332,106 - Shewana3_0299 0.13 -0.2
Or see this region's nucleotide sequence