Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0268 and Shewana3_0269 are separated by 304 nucleotides Shewana3_0269 and Shewana3_0270 are separated by 117 nucleotides Shewana3_0270 and Shewana3_0271 are separated by 36 nucleotides
Shewana3_0268: Shewana3_0268 - site-specific DNA-methyltransferase (adenine-specific) (RefSeq), at 301,666 to 302,505
_0268
Shewana3_0269: Shewana3_0269 - diguanylate cyclase (RefSeq), at 302,810 to 304,267
_0269
Shewana3_0270: Shewana3_0270 - MOSC domain-containing protein (RefSeq), at 304,385 to 305,080
_0270
Shewana3_0271: Shewana3_0271 - hypothetical protein (RefSeq), at 305,117 to 305,473
_0271
Position (kb) 302
303
304
305 Strain fitness (log2 ratio) -1
0
1
2 at 301.819 kb on + strand, within Shewana3_0268 at 301.855 kb on + strand, within Shewana3_0268 at 301.892 kb on - strand, within Shewana3_0268 at 301.897 kb on + strand, within Shewana3_0268 at 301.915 kb on + strand, within Shewana3_0268 at 301.923 kb on - strand, within Shewana3_0268 at 301.940 kb on + strand, within Shewana3_0268 at 301.953 kb on - strand, within Shewana3_0268 at 302.047 kb on - strand, within Shewana3_0268 at 302.141 kb on - strand, within Shewana3_0268 at 302.182 kb on + strand, within Shewana3_0268 at 302.291 kb on + strand, within Shewana3_0268 at 302.299 kb on + strand, within Shewana3_0268 at 302.324 kb on + strand, within Shewana3_0268 at 302.353 kb on + strand, within Shewana3_0268 at 302.415 kb on - strand, within Shewana3_0268 at 302.856 kb on + strand at 302.864 kb on - strand at 302.912 kb on + strand at 302.912 kb on + strand at 303.238 kb on + strand, within Shewana3_0269 at 303.257 kb on - strand, within Shewana3_0269 at 303.318 kb on + strand, within Shewana3_0269 at 303.371 kb on - strand, within Shewana3_0269 at 303.385 kb on + strand, within Shewana3_0269 at 303.385 kb on + strand, within Shewana3_0269 at 303.393 kb on - strand, within Shewana3_0269 at 303.505 kb on - strand, within Shewana3_0269 at 303.535 kb on + strand, within Shewana3_0269 at 303.554 kb on - strand, within Shewana3_0269 at 303.565 kb on - strand, within Shewana3_0269 at 303.668 kb on - strand, within Shewana3_0269 at 303.695 kb on + strand, within Shewana3_0269 at 303.722 kb on - strand, within Shewana3_0269 at 303.765 kb on + strand, within Shewana3_0269 at 303.765 kb on + strand, within Shewana3_0269 at 303.773 kb on - strand, within Shewana3_0269 at 303.929 kb on + strand, within Shewana3_0269 at 303.938 kb on - strand, within Shewana3_0269 at 303.969 kb on + strand, within Shewana3_0269 at 304.149 kb on + strand at 304.149 kb on + strand at 304.157 kb on - strand at 304.272 kb on - strand at 304.352 kb on + strand at 304.536 kb on + strand, within Shewana3_0270 at 304.603 kb on - strand, within Shewana3_0270 at 304.795 kb on - strand, within Shewana3_0270 at 304.804 kb on + strand, within Shewana3_0270 at 304.880 kb on - strand, within Shewana3_0270 at 304.880 kb on - strand, within Shewana3_0270 at 305.104 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 301,819 + Shewana3_0268 0.18 -0.5 301,855 + Shewana3_0268 0.23 -1.3 301,892 - Shewana3_0268 0.27 -1.1 301,897 + Shewana3_0268 0.28 +0.2 301,915 + Shewana3_0268 0.30 -0.2 301,923 - Shewana3_0268 0.31 -0.2 301,940 + Shewana3_0268 0.33 +0.0 301,953 - Shewana3_0268 0.34 +0.0 302,047 - Shewana3_0268 0.45 +0.9 302,141 - Shewana3_0268 0.57 +0.9 302,182 + Shewana3_0268 0.61 +0.3 302,291 + Shewana3_0268 0.74 +0.3 302,299 + Shewana3_0268 0.75 +0.9 302,324 + Shewana3_0268 0.78 -1.5 302,353 + Shewana3_0268 0.82 -0.3 302,415 - Shewana3_0268 0.89 -1.1 302,856 + +0.4 302,864 - +0.6 302,912 + +0.1 302,912 + +0.0 303,238 + Shewana3_0269 0.29 +0.3 303,257 - Shewana3_0269 0.31 -0.6 303,318 + Shewana3_0269 0.35 +0.9 303,371 - Shewana3_0269 0.38 +0.1 303,385 + Shewana3_0269 0.39 -0.6 303,385 + Shewana3_0269 0.39 -0.3 303,393 - Shewana3_0269 0.40 +0.3 303,505 - Shewana3_0269 0.48 -0.4 303,535 + Shewana3_0269 0.50 +0.6 303,554 - Shewana3_0269 0.51 +0.0 303,565 - Shewana3_0269 0.52 +0.0 303,668 - Shewana3_0269 0.59 -0.0 303,695 + Shewana3_0269 0.61 +0.1 303,722 - Shewana3_0269 0.63 +1.1 303,765 + Shewana3_0269 0.66 -0.1 303,765 + Shewana3_0269 0.66 -0.5 303,773 - Shewana3_0269 0.66 +0.5 303,929 + Shewana3_0269 0.77 +0.1 303,938 - Shewana3_0269 0.77 +1.1 303,969 + Shewana3_0269 0.79 -0.8 304,149 + -0.9 304,149 + -1.1 304,157 - -1.3 304,272 - +0.1 304,352 + +0.2 304,536 + Shewana3_0270 0.22 +0.0 304,603 - Shewana3_0270 0.31 +0.1 304,795 - Shewana3_0270 0.59 -0.5 304,804 + Shewana3_0270 0.60 -0.1 304,880 - Shewana3_0270 0.71 +2.1 304,880 - Shewana3_0270 0.71 -0.2 305,104 - -0.0
Or see this region's nucleotide sequence