Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0261 and Shewana3_0262 are separated by 149 nucleotides Shewana3_0262 and Shewana3_0263 are separated by 116 nucleotides Shewana3_0263 and Shewana3_0264 are separated by 311 nucleotides
Shewana3_0261: Shewana3_0261 - iron-containing alcohol dehydrogenase (RefSeq), at 292,460 to 293,617
_0261
Shewana3_0262: Shewana3_0262 - TetR family transcriptional regulator (RefSeq), at 293,767 to 294,363
_0262
Shewana3_0263: Shewana3_0263 - hypothetical protein (RefSeq), at 294,480 to 294,791
_0263
Shewana3_0264: Shewana3_0264 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 295,103 to 297,058
_0264
Position (kb) 293
294
295 Strain fitness (log2 ratio) -1
0
1 at 292.786 kb on - strand, within Shewana3_0261 at 292.807 kb on + strand, within Shewana3_0261 at 292.808 kb on - strand, within Shewana3_0261 at 292.835 kb on + strand, within Shewana3_0261 at 292.835 kb on + strand, within Shewana3_0261 at 292.835 kb on + strand, within Shewana3_0261 at 292.835 kb on + strand, within Shewana3_0261 at 292.843 kb on - strand, within Shewana3_0261 at 292.849 kb on - strand, within Shewana3_0261 at 292.907 kb on + strand, within Shewana3_0261 at 292.922 kb on + strand, within Shewana3_0261 at 292.977 kb on + strand, within Shewana3_0261 at 292.985 kb on - strand, within Shewana3_0261 at 292.990 kb on - strand, within Shewana3_0261 at 292.993 kb on - strand, within Shewana3_0261 at 293.084 kb on + strand, within Shewana3_0261 at 293.210 kb on + strand, within Shewana3_0261 at 293.210 kb on + strand, within Shewana3_0261 at 293.408 kb on + strand, within Shewana3_0261 at 293.539 kb on + strand at 293.539 kb on + strand at 293.628 kb on + strand at 293.805 kb on + strand at 293.805 kb on + strand at 293.813 kb on - strand at 293.972 kb on - strand, within Shewana3_0262 at 294.005 kb on + strand, within Shewana3_0262 at 294.070 kb on - strand, within Shewana3_0262 at 294.070 kb on - strand, within Shewana3_0262 at 294.130 kb on - strand, within Shewana3_0262 at 294.169 kb on - strand, within Shewana3_0262 at 294.169 kb on - strand, within Shewana3_0262 at 294.191 kb on - strand, within Shewana3_0262 at 294.279 kb on - strand, within Shewana3_0262 at 294.642 kb on - strand, within Shewana3_0263 at 294.648 kb on - strand, within Shewana3_0263 at 294.718 kb on - strand, within Shewana3_0263 at 295.258 kb on + strand at 295.258 kb on + strand at 295.298 kb on - strand at 295.331 kb on + strand, within Shewana3_0264
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 292,786 - Shewana3_0261 0.28 +0.2 292,807 + Shewana3_0261 0.30 -1.4 292,808 - Shewana3_0261 0.30 +0.4 292,835 + Shewana3_0261 0.32 +0.2 292,835 + Shewana3_0261 0.32 +0.4 292,835 + Shewana3_0261 0.32 -0.6 292,835 + Shewana3_0261 0.32 -0.6 292,843 - Shewana3_0261 0.33 +0.3 292,849 - Shewana3_0261 0.34 -0.8 292,907 + Shewana3_0261 0.39 -0.5 292,922 + Shewana3_0261 0.40 -0.4 292,977 + Shewana3_0261 0.45 +0.2 292,985 - Shewana3_0261 0.45 +0.1 292,990 - Shewana3_0261 0.46 +0.8 292,993 - Shewana3_0261 0.46 +0.2 293,084 + Shewana3_0261 0.54 -0.5 293,210 + Shewana3_0261 0.65 +0.2 293,210 + Shewana3_0261 0.65 +0.2 293,408 + Shewana3_0261 0.82 -0.0 293,539 + +0.1 293,539 + -0.5 293,628 + -0.4 293,805 + -0.5 293,805 + -0.4 293,813 - -0.3 293,972 - Shewana3_0262 0.34 +0.5 294,005 + Shewana3_0262 0.40 +0.1 294,070 - Shewana3_0262 0.51 +1.6 294,070 - Shewana3_0262 0.51 +1.0 294,130 - Shewana3_0262 0.61 +1.1 294,169 - Shewana3_0262 0.67 -0.2 294,169 - Shewana3_0262 0.67 -0.7 294,191 - Shewana3_0262 0.71 -0.1 294,279 - Shewana3_0262 0.86 -0.2 294,642 - Shewana3_0263 0.52 -0.3 294,648 - Shewana3_0263 0.54 +1.0 294,718 - Shewana3_0263 0.76 -0.8 295,258 + +0.9 295,258 + +0.5 295,298 - +0.3 295,331 + Shewana3_0264 0.12 +0.3
Or see this region's nucleotide sequence