Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0235 and Shewana3_0236 overlap by 4 nucleotides Shewana3_0236 and Shewana3_0237 overlap by 4 nucleotides Shewana3_0237 and Shewana3_R0016 are separated by 478 nucleotides
Shewana3_0235: Shewana3_0235 - periplasmic protein thiol--disulphide oxidoreductase DsbE (RefSeq), at 265,226 to 265,780
_0235
Shewana3_0236: Shewana3_0236 - cytochrome C biogenesis protein (RefSeq), at 265,777 to 266,256
_0236
Shewana3_0237: Shewana3_0237 - redoxin domain-containing protein (RefSeq), at 266,253 to 266,834
_0237
Shewana3_R0016: Shewana3_R0016 - 16S ribosomal RNA (RefSeq), at 267,313 to 268,867
_R0016
Position (kb) 266
267 Strain fitness (log2 ratio) -1
0
1
2 at 265.395 kb on - strand, within Shewana3_0235 at 265.532 kb on - strand, within Shewana3_0235 at 265.562 kb on + strand, within Shewana3_0235 at 265.613 kb on + strand, within Shewana3_0235 at 265.765 kb on + strand at 265.842 kb on + strand, within Shewana3_0236 at 265.851 kb on + strand, within Shewana3_0236 at 265.915 kb on - strand, within Shewana3_0236 at 265.952 kb on + strand, within Shewana3_0236 at 266.018 kb on - strand, within Shewana3_0236 at 266.113 kb on + strand, within Shewana3_0236 at 266.113 kb on + strand, within Shewana3_0236 at 266.249 kb on - strand at 266.279 kb on - strand at 266.526 kb on + strand, within Shewana3_0237 at 266.546 kb on + strand, within Shewana3_0237 at 266.568 kb on + strand, within Shewana3_0237 at 266.624 kb on - strand, within Shewana3_0237 at 266.671 kb on + strand, within Shewana3_0237 at 266.674 kb on - strand, within Shewana3_0237 at 266.738 kb on - strand, within Shewana3_0237 at 266.800 kb on - strand at 267.077 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 265,395 - Shewana3_0235 0.30 +0.3 265,532 - Shewana3_0235 0.55 -0.1 265,562 + Shewana3_0235 0.61 +1.1 265,613 + Shewana3_0235 0.70 +1.4 265,765 + +0.9 265,842 + Shewana3_0236 0.14 +2.7 265,851 + Shewana3_0236 0.15 +0.5 265,915 - Shewana3_0236 0.29 +0.5 265,952 + Shewana3_0236 0.36 +1.1 266,018 - Shewana3_0236 0.50 -0.1 266,113 + Shewana3_0236 0.70 +1.3 266,113 + Shewana3_0236 0.70 +1.1 266,249 - -0.2 266,279 - +0.4 266,526 + Shewana3_0237 0.47 -0.1 266,546 + Shewana3_0237 0.50 -0.7 266,568 + Shewana3_0237 0.54 +0.2 266,624 - Shewana3_0237 0.64 -0.9 266,671 + Shewana3_0237 0.72 -1.4 266,674 - Shewana3_0237 0.72 -0.5 266,738 - Shewana3_0237 0.83 -0.7 266,800 - -0.8 267,077 + +0.2
Or see this region's nucleotide sequence