Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0129 and Shewana3_0130 are separated by 54 nucleotides Shewana3_0130 and Shewana3_0131 are separated by 11 nucleotides Shewana3_0131 and Shewana3_0132 are separated by 247 nucleotides Shewana3_0132 and Shewana3_0133 are separated by 75 nucleotides
Shewana3_0129: Shewana3_0129 - response regulator receiver protein (RefSeq), at 144,781 to 145,443
_0129
Shewana3_0130: Shewana3_0130 - molybdopterin biosynthesis protein MoeB (RefSeq), at 145,498 to 146,259
_0130
Shewana3_0131: Shewana3_0131 - molybdopterin molybdochelatase (RefSeq), at 146,271 to 147,605
_0131
Shewana3_0132: Shewana3_0132 - Ferritin, Dps family protein (RefSeq), at 147,853 to 148,389
_0132
Shewana3_0133: Shewana3_0133 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 148,465 to 151,698
_0133
Position (kb) 146
147
148 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 145.275 kb on + strand, within Shewana3_0129 at 145.288 kb on - strand, within Shewana3_0129 at 145.348 kb on + strand, within Shewana3_0129 at 145.351 kb on - strand, within Shewana3_0129 at 145.353 kb on + strand, within Shewana3_0129 at 145.353 kb on + strand, within Shewana3_0129 at 145.362 kb on - strand, within Shewana3_0129 at 145.399 kb on + strand at 145.399 kb on + strand at 145.414 kb on - strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.522 kb on + strand at 145.535 kb on - strand at 145.688 kb on - strand, within Shewana3_0130 at 145.793 kb on + strand, within Shewana3_0130 at 145.815 kb on + strand, within Shewana3_0130 at 146.119 kb on + strand, within Shewana3_0130 at 146.127 kb on - strand, within Shewana3_0130 at 146.269 kb on + strand at 146.269 kb on + strand at 146.277 kb on - strand at 146.277 kb on - strand at 146.437 kb on - strand, within Shewana3_0131 at 146.511 kb on - strand, within Shewana3_0131 at 146.519 kb on - strand, within Shewana3_0131 at 146.668 kb on - strand, within Shewana3_0131 at 146.759 kb on - strand, within Shewana3_0131 at 146.772 kb on + strand, within Shewana3_0131 at 146.990 kb on - strand, within Shewana3_0131 at 147.011 kb on - strand, within Shewana3_0131 at 147.106 kb on + strand, within Shewana3_0131 at 147.106 kb on + strand, within Shewana3_0131 at 147.106 kb on + strand, within Shewana3_0131 at 147.106 kb on + strand, within Shewana3_0131 at 147.106 kb on + strand, within Shewana3_0131 at 147.108 kb on - strand, within Shewana3_0131 at 147.108 kb on - strand, within Shewana3_0131 at 147.108 kb on - strand, within Shewana3_0131 at 147.108 kb on - strand, within Shewana3_0131 at 147.114 kb on - strand, within Shewana3_0131 at 147.114 kb on - strand, within Shewana3_0131 at 147.114 kb on - strand, within Shewana3_0131 at 147.114 kb on - strand, within Shewana3_0131 at 147.140 kb on + strand, within Shewana3_0131 at 147.439 kb on + strand, within Shewana3_0131 at 147.439 kb on + strand, within Shewana3_0131 at 147.439 kb on + strand, within Shewana3_0131 at 147.439 kb on + strand, within Shewana3_0131 at 147.528 kb on - strand at 147.581 kb on + strand at 147.592 kb on + strand at 147.602 kb on + strand at 147.661 kb on - strand at 147.949 kb on + strand, within Shewana3_0132 at 148.042 kb on + strand, within Shewana3_0132 at 148.218 kb on + strand, within Shewana3_0132
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 145,275 + Shewana3_0129 0.75 -0.2 145,288 - Shewana3_0129 0.76 +0.2 145,348 + Shewana3_0129 0.86 -0.1 145,351 - Shewana3_0129 0.86 -0.3 145,353 + Shewana3_0129 0.86 +0.1 145,353 + Shewana3_0129 0.86 -0.1 145,362 - Shewana3_0129 0.88 -0.9 145,399 + +0.2 145,399 + +0.6 145,414 - +0.7 145,488 - -1.5 145,488 - -0.0 145,522 + -0.2 145,535 - -2.2 145,688 - Shewana3_0130 0.25 -1.8 145,793 + Shewana3_0130 0.39 -2.0 145,815 + Shewana3_0130 0.42 +0.2 146,119 + Shewana3_0130 0.81 -2.3 146,127 - Shewana3_0130 0.83 -4.2 146,269 + -1.2 146,269 + -2.9 146,277 - +1.4 146,277 - -0.2 146,437 - Shewana3_0131 0.12 -0.9 146,511 - Shewana3_0131 0.18 -0.9 146,519 - Shewana3_0131 0.19 -0.6 146,668 - Shewana3_0131 0.30 -0.9 146,759 - Shewana3_0131 0.37 -1.0 146,772 + Shewana3_0131 0.38 -1.1 146,990 - Shewana3_0131 0.54 -2.6 147,011 - Shewana3_0131 0.55 +0.2 147,106 + Shewana3_0131 0.63 -2.4 147,106 + Shewana3_0131 0.63 -0.5 147,106 + Shewana3_0131 0.63 -2.3 147,106 + Shewana3_0131 0.63 -1.6 147,106 + Shewana3_0131 0.63 -1.8 147,108 - Shewana3_0131 0.63 -0.6 147,108 - Shewana3_0131 0.63 -1.7 147,108 - Shewana3_0131 0.63 -0.5 147,108 - Shewana3_0131 0.63 -1.1 147,114 - Shewana3_0131 0.63 -1.5 147,114 - Shewana3_0131 0.63 +0.6 147,114 - Shewana3_0131 0.63 -1.0 147,114 - Shewana3_0131 0.63 -0.6 147,140 + Shewana3_0131 0.65 +0.0 147,439 + Shewana3_0131 0.87 -0.3 147,439 + Shewana3_0131 0.87 -0.4 147,439 + Shewana3_0131 0.87 -0.4 147,439 + Shewana3_0131 0.87 -3.3 147,528 - -0.8 147,581 + +0.2 147,592 + +0.8 147,602 + +0.2 147,661 - +0.5 147,949 + Shewana3_0132 0.18 -1.1 148,042 + Shewana3_0132 0.35 +0.2 148,218 + Shewana3_0132 0.68 -0.2
Or see this region's nucleotide sequence