Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0080 and Shewana3_0081 are separated by 140 nucleotides Shewana3_0081 and Shewana3_0082 are separated by 107 nucleotides Shewana3_0082 and Shewana3_0083 are separated by 118 nucleotides
Shewana3_0080: Shewana3_0080 - AMP-dependent synthetase and ligase (RefSeq), at 92,480 to 94,273
_0080
Shewana3_0081: Shewana3_0081 - MORN repeat-containing protein (RefSeq), at 94,414 to 96,903
_0081
Shewana3_0082: Shewana3_0082 - thioesterase superfamily protein (RefSeq), at 97,011 to 97,421
_0082
Shewana3_0083: Shewana3_0083 - HPP family protein (RefSeq), at 97,540 to 98,088
_0083
Position (kb) 94
95
96
97 Strain fitness (log2 ratio) -2
-1
0
1
2 at 93.769 kb on + strand, within Shewana3_0080 at 93.973 kb on + strand, within Shewana3_0080 at 94.027 kb on + strand, within Shewana3_0080 at 94.110 kb on + strand at 94.123 kb on - strand at 94.157 kb on - strand at 94.171 kb on - strand at 94.391 kb on + strand at 94.398 kb on - strand at 94.459 kb on - strand at 94.464 kb on - strand at 94.682 kb on + strand, within Shewana3_0081 at 94.682 kb on + strand, within Shewana3_0081 at 94.700 kb on - strand, within Shewana3_0081 at 94.741 kb on + strand, within Shewana3_0081 at 94.817 kb on + strand, within Shewana3_0081 at 94.851 kb on - strand, within Shewana3_0081 at 94.887 kb on + strand, within Shewana3_0081 at 95.047 kb on - strand, within Shewana3_0081 at 95.095 kb on - strand, within Shewana3_0081 at 95.113 kb on + strand, within Shewana3_0081 at 95.166 kb on - strand, within Shewana3_0081 at 95.234 kb on + strand, within Shewana3_0081 at 95.237 kb on - strand, within Shewana3_0081 at 95.282 kb on - strand, within Shewana3_0081 at 95.348 kb on - strand, within Shewana3_0081 at 95.349 kb on + strand, within Shewana3_0081 at 95.385 kb on + strand, within Shewana3_0081 at 95.420 kb on + strand, within Shewana3_0081 at 95.528 kb on - strand, within Shewana3_0081 at 95.782 kb on + strand, within Shewana3_0081 at 95.847 kb on + strand, within Shewana3_0081 at 95.894 kb on + strand, within Shewana3_0081 at 96.046 kb on - strand, within Shewana3_0081 at 96.056 kb on - strand, within Shewana3_0081 at 96.080 kb on - strand, within Shewana3_0081 at 96.095 kb on - strand, within Shewana3_0081 at 96.188 kb on + strand, within Shewana3_0081 at 96.214 kb on + strand, within Shewana3_0081 at 96.434 kb on - strand, within Shewana3_0081 at 96.434 kb on - strand, within Shewana3_0081 at 96.492 kb on + strand, within Shewana3_0081 at 96.586 kb on + strand, within Shewana3_0081 at 96.676 kb on - strand at 96.836 kb on - strand at 96.836 kb on - strand at 96.975 kb on + strand at 96.983 kb on - strand at 97.065 kb on + strand, within Shewana3_0082 at 97.111 kb on - strand, within Shewana3_0082 at 97.267 kb on + strand, within Shewana3_0082 at 97.341 kb on + strand, within Shewana3_0082 at 97.346 kb on - strand, within Shewana3_0082 at 97.392 kb on - strand at 97.393 kb on + strand at 97.406 kb on + strand at 97.424 kb on - strand at 97.575 kb on + strand at 97.575 kb on + strand at 97.688 kb on + strand, within Shewana3_0083 at 97.726 kb on + strand, within Shewana3_0083 at 97.726 kb on + strand, within Shewana3_0083 at 97.734 kb on - strand, within Shewana3_0083 at 97.789 kb on + strand, within Shewana3_0083
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 93,769 + Shewana3_0080 0.72 +1.5 93,973 + Shewana3_0080 0.83 +0.8 94,027 + Shewana3_0080 0.86 -0.1 94,110 + -0.3 94,123 - +0.2 94,157 - -0.4 94,171 - -0.2 94,391 + +0.0 94,398 - -0.2 94,459 - -0.4 94,464 - +0.6 94,682 + Shewana3_0081 0.11 -1.1 94,682 + Shewana3_0081 0.11 -0.7 94,700 - Shewana3_0081 0.11 +0.1 94,741 + Shewana3_0081 0.13 -0.3 94,817 + Shewana3_0081 0.16 -0.9 94,851 - Shewana3_0081 0.18 -0.8 94,887 + Shewana3_0081 0.19 -0.5 95,047 - Shewana3_0081 0.25 -0.3 95,095 - Shewana3_0081 0.27 -0.2 95,113 + Shewana3_0081 0.28 -0.8 95,166 - Shewana3_0081 0.30 -1.6 95,234 + Shewana3_0081 0.33 -0.7 95,237 - Shewana3_0081 0.33 -0.5 95,282 - Shewana3_0081 0.35 -0.3 95,348 - Shewana3_0081 0.38 +0.6 95,349 + Shewana3_0081 0.38 -0.9 95,385 + Shewana3_0081 0.39 -1.0 95,420 + Shewana3_0081 0.40 +0.1 95,528 - Shewana3_0081 0.45 +1.9 95,782 + Shewana3_0081 0.55 -0.8 95,847 + Shewana3_0081 0.58 +0.5 95,894 + Shewana3_0081 0.59 +0.8 96,046 - Shewana3_0081 0.66 -0.5 96,056 - Shewana3_0081 0.66 -1.0 96,080 - Shewana3_0081 0.67 -0.4 96,095 - Shewana3_0081 0.68 -1.1 96,188 + Shewana3_0081 0.71 +0.2 96,214 + Shewana3_0081 0.72 -0.1 96,434 - Shewana3_0081 0.81 +0.8 96,434 - Shewana3_0081 0.81 +0.3 96,492 + Shewana3_0081 0.83 -1.1 96,586 + Shewana3_0081 0.87 +1.1 96,676 - -0.6 96,836 - +0.1 96,836 - +0.2 96,975 + -0.7 96,983 - -0.7 97,065 + Shewana3_0082 0.13 -0.0 97,111 - Shewana3_0082 0.24 +0.2 97,267 + Shewana3_0082 0.62 -0.2 97,341 + Shewana3_0082 0.80 -2.6 97,346 - Shewana3_0082 0.82 -1.1 97,392 - +0.0 97,393 + -0.1 97,406 + -0.5 97,424 - +0.0 97,575 + +0.2 97,575 + -0.1 97,688 + Shewana3_0083 0.27 -0.1 97,726 + Shewana3_0083 0.34 -1.0 97,726 + Shewana3_0083 0.34 -1.5 97,734 - Shewana3_0083 0.35 +0.0 97,789 + Shewana3_0083 0.45 +0.4
Or see this region's nucleotide sequence