Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0066 and Shewana3_0067 are separated by 256 nucleotides Shewana3_0067 and Shewana3_0068 are separated by 260 nucleotides
Shewana3_0066: Shewana3_0066 - sucrose phosphorylase (RefSeq), at 76,921 to 78,405
_0066
Shewana3_0067: Shewana3_0067 - sucrose permease scrT <small>(from data)</small>, at 78,662 to 79,882
_0067
Shewana3_0068: Shewana3_0068 - TonB-dependent receptor (RefSeq), at 80,143 to 82,539
_0068
Position (kb) 78
79
80 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 77.931 kb on + strand, within Shewana3_0066 at 77.939 kb on - strand, within Shewana3_0066 at 78.113 kb on + strand, within Shewana3_0066 at 78.226 kb on - strand, within Shewana3_0066 at 78.416 kb on + strand at 78.557 kb on - strand at 79.040 kb on - strand, within Shewana3_0067 at 79.218 kb on - strand, within Shewana3_0067 at 79.246 kb on + strand, within Shewana3_0067 at 79.424 kb on + strand, within Shewana3_0067 at 79.589 kb on + strand, within Shewana3_0067 at 79.599 kb on + strand, within Shewana3_0067 at 79.689 kb on + strand, within Shewana3_0067 at 79.689 kb on + strand, within Shewana3_0067 at 79.845 kb on - strand at 79.859 kb on + strand at 80.102 kb on + strand at 80.205 kb on + strand at 80.266 kb on - strand at 80.267 kb on + strand at 80.275 kb on + strand at 80.276 kb on - strand at 80.331 kb on - strand at 80.352 kb on + strand at 80.354 kb on - strand at 80.399 kb on + strand, within Shewana3_0068 at 80.575 kb on + strand, within Shewana3_0068 at 80.622 kb on + strand, within Shewana3_0068 at 80.688 kb on + strand, within Shewana3_0068 at 80.850 kb on - strand, within Shewana3_0068
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 77,931 + Shewana3_0066 0.68 -2.6 77,939 - Shewana3_0066 0.69 -4.0 78,113 + Shewana3_0066 0.80 -3.6 78,226 - Shewana3_0066 0.88 -3.8 78,416 + -3.3 78,557 - +2.1 79,040 - Shewana3_0067 0.31 -4.7 79,218 - Shewana3_0067 0.46 -3.8 79,246 + Shewana3_0067 0.48 +2.1 79,424 + Shewana3_0067 0.62 -3.7 79,589 + Shewana3_0067 0.76 -3.8 79,599 + Shewana3_0067 0.77 -2.7 79,689 + Shewana3_0067 0.84 -4.1 79,689 + Shewana3_0067 0.84 -3.4 79,845 - -3.6 79,859 + -4.1 80,102 + -0.2 80,205 + -4.7 80,266 - -3.3 80,267 + -3.2 80,275 + -2.1 80,276 - -3.1 80,331 - -3.7 80,352 + -3.4 80,354 - -2.9 80,399 + Shewana3_0068 0.11 -0.1 80,575 + Shewana3_0068 0.18 -3.2 80,622 + Shewana3_0068 0.20 -5.5 80,688 + Shewana3_0068 0.23 -2.5 80,850 - Shewana3_0068 0.29 -2.4
Or see this region's nucleotide sequence