Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0062 and Shewana3_0063 are separated by 99 nucleotides Shewana3_0063 and Shewana3_0064 are separated by 24 nucleotides Shewana3_0064 and Shewana3_0065 are separated by 88 nucleotides
Shewana3_0062: Shewana3_0062 - hypothetical protein (RefSeq), at 72,956 to 73,693
_0062
Shewana3_0063: Shewana3_0063 - NLP/P60 protein (RefSeq), at 73,793 to 74,272
_0063
Shewana3_0064: Shewana3_0064 - major facilitator transporter (RefSeq), at 74,297 to 75,745
_0064
Shewana3_0065: Shewana3_0065 - LacI family transcription regulator (RefSeq), at 75,834 to 76,862
_0065
Position (kb) 74
75
76 Strain fitness (log2 ratio) -1
0
1 at 73.312 kb on - strand, within Shewana3_0062 at 73.458 kb on - strand, within Shewana3_0062 at 73.573 kb on - strand, within Shewana3_0062 at 73.693 kb on + strand at 73.797 kb on + strand at 73.843 kb on - strand, within Shewana3_0063 at 73.870 kb on + strand, within Shewana3_0063 at 73.870 kb on + strand, within Shewana3_0063 at 73.899 kb on - strand, within Shewana3_0063 at 74.035 kb on + strand, within Shewana3_0063 at 74.112 kb on - strand, within Shewana3_0063 at 74.285 kb on + strand at 74.293 kb on - strand at 74.301 kb on - strand at 74.330 kb on + strand at 74.481 kb on + strand, within Shewana3_0064 at 74.573 kb on - strand, within Shewana3_0064 at 74.733 kb on - strand, within Shewana3_0064 at 74.773 kb on - strand, within Shewana3_0064 at 74.962 kb on + strand, within Shewana3_0064 at 74.989 kb on - strand, within Shewana3_0064 at 75.005 kb on + strand, within Shewana3_0064 at 75.011 kb on + strand, within Shewana3_0064 at 75.019 kb on - strand, within Shewana3_0064 at 75.026 kb on + strand, within Shewana3_0064 at 75.045 kb on + strand, within Shewana3_0064 at 75.133 kb on + strand, within Shewana3_0064 at 75.300 kb on - strand, within Shewana3_0064 at 75.338 kb on + strand, within Shewana3_0064 at 75.369 kb on + strand, within Shewana3_0064 at 75.382 kb on - strand, within Shewana3_0064 at 75.425 kb on + strand, within Shewana3_0064 at 75.425 kb on + strand, within Shewana3_0064 at 75.437 kb on + strand, within Shewana3_0064 at 75.548 kb on + strand, within Shewana3_0064 at 75.556 kb on - strand, within Shewana3_0064 at 75.764 kb on + strand at 75.764 kb on + strand at 75.764 kb on + strand at 75.772 kb on - strand at 75.972 kb on - strand, within Shewana3_0065 at 76.018 kb on - strand, within Shewana3_0065 at 76.054 kb on + strand, within Shewana3_0065 at 76.054 kb on + strand, within Shewana3_0065 at 76.121 kb on - strand, within Shewana3_0065 at 76.327 kb on + strand, within Shewana3_0065 at 76.461 kb on + strand, within Shewana3_0065 at 76.461 kb on + strand, within Shewana3_0065 at 76.504 kb on + strand, within Shewana3_0065 at 76.506 kb on - strand, within Shewana3_0065 at 76.510 kb on + strand, within Shewana3_0065 at 76.594 kb on + strand, within Shewana3_0065 at 76.743 kb on - strand, within Shewana3_0065
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 73,312 - Shewana3_0062 0.48 -0.0 73,458 - Shewana3_0062 0.68 -0.1 73,573 - Shewana3_0062 0.84 -0.6 73,693 + -0.5 73,797 + -0.6 73,843 - Shewana3_0063 0.10 +1.0 73,870 + Shewana3_0063 0.16 -1.0 73,870 + Shewana3_0063 0.16 -0.2 73,899 - Shewana3_0063 0.22 -1.4 74,035 + Shewana3_0063 0.50 +1.0 74,112 - Shewana3_0063 0.66 -0.0 74,285 + +0.0 74,293 - +0.1 74,301 - -0.1 74,330 + +0.1 74,481 + Shewana3_0064 0.13 -0.0 74,573 - Shewana3_0064 0.19 -0.3 74,733 - Shewana3_0064 0.30 +0.1 74,773 - Shewana3_0064 0.33 +0.2 74,962 + Shewana3_0064 0.46 -0.7 74,989 - Shewana3_0064 0.48 -0.3 75,005 + Shewana3_0064 0.49 +0.1 75,011 + Shewana3_0064 0.49 +0.5 75,019 - Shewana3_0064 0.50 +0.0 75,026 + Shewana3_0064 0.50 -0.8 75,045 + Shewana3_0064 0.52 -1.0 75,133 + Shewana3_0064 0.58 +0.5 75,300 - Shewana3_0064 0.69 +0.3 75,338 + Shewana3_0064 0.72 -0.1 75,369 + Shewana3_0064 0.74 -0.3 75,382 - Shewana3_0064 0.75 -0.8 75,425 + Shewana3_0064 0.78 +0.6 75,425 + Shewana3_0064 0.78 -0.1 75,437 + Shewana3_0064 0.79 -0.8 75,548 + Shewana3_0064 0.86 -0.3 75,556 - Shewana3_0064 0.87 -0.6 75,764 + -0.2 75,764 + +0.8 75,764 + -1.5 75,772 - +0.6 75,972 - Shewana3_0065 0.13 +1.0 76,018 - Shewana3_0065 0.18 +1.2 76,054 + Shewana3_0065 0.21 +1.0 76,054 + Shewana3_0065 0.21 -0.2 76,121 - Shewana3_0065 0.28 -0.1 76,327 + Shewana3_0065 0.48 +1.2 76,461 + Shewana3_0065 0.61 +0.3 76,461 + Shewana3_0065 0.61 +0.4 76,504 + Shewana3_0065 0.65 +0.3 76,506 - Shewana3_0065 0.65 +0.8 76,510 + Shewana3_0065 0.66 +0.8 76,594 + Shewana3_0065 0.74 +0.8 76,743 - Shewana3_0065 0.88 +1.2
Or see this region's nucleotide sequence