Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0058 and Shewana3_0059 are separated by 44 nucleotides Shewana3_0059 and Shewana3_0060 are separated by 0 nucleotides Shewana3_0060 and Shewana3_0061 are separated by 228 nucleotides
Shewana3_0058: Shewana3_0058 - TrkA domain-containing protein (RefSeq), at 69,187 to 69,885
_0058
Shewana3_0059: Shewana3_0059 - two component transcriptional regulator (RefSeq), at 69,930 to 70,619
_0059
Shewana3_0060: Shewana3_0060 - ATPase domain-containing protein (RefSeq), at 70,620 to 71,666
_0060
Shewana3_0061: Shewana3_0061 - pirin domain-containing protein (RefSeq), at 71,895 to 72,821
_0061
Position (kb) 70
71
72 Strain fitness (log2 ratio) -1
0
1
2 at 69.699 kb on + strand, within Shewana3_0058 at 69.699 kb on + strand, within Shewana3_0058 at 69.860 kb on + strand at 69.907 kb on + strand at 69.927 kb on + strand at 69.927 kb on + strand at 69.927 kb on + strand at 69.935 kb on - strand at 69.935 kb on - strand at 69.935 kb on - strand at 69.935 kb on - strand at 70.150 kb on - strand, within Shewana3_0059 at 70.151 kb on - strand, within Shewana3_0059 at 70.339 kb on + strand, within Shewana3_0059 at 70.386 kb on + strand, within Shewana3_0059 at 70.399 kb on + strand, within Shewana3_0059 at 70.454 kb on + strand, within Shewana3_0059 at 70.462 kb on - strand, within Shewana3_0059 at 70.462 kb on - strand, within Shewana3_0059 at 70.649 kb on - strand at 70.673 kb on - strand at 70.733 kb on + strand, within Shewana3_0060 at 70.734 kb on + strand, within Shewana3_0060 at 70.742 kb on - strand, within Shewana3_0060 at 70.779 kb on - strand, within Shewana3_0060 at 70.779 kb on - strand, within Shewana3_0060 at 70.816 kb on - strand, within Shewana3_0060 at 70.823 kb on - strand, within Shewana3_0060 at 70.823 kb on - strand, within Shewana3_0060 at 70.828 kb on - strand, within Shewana3_0060 at 70.850 kb on + strand, within Shewana3_0060 at 70.876 kb on - strand, within Shewana3_0060 at 70.907 kb on + strand, within Shewana3_0060 at 70.915 kb on - strand, within Shewana3_0060 at 71.019 kb on - strand, within Shewana3_0060 at 71.034 kb on + strand, within Shewana3_0060 at 71.185 kb on - strand, within Shewana3_0060 at 71.495 kb on - strand, within Shewana3_0060 at 71.549 kb on - strand, within Shewana3_0060 at 71.571 kb on + strand at 71.708 kb on + strand at 71.710 kb on - strand at 71.937 kb on + strand at 71.937 kb on + strand at 72.209 kb on + strand, within Shewana3_0061 at 72.217 kb on - strand, within Shewana3_0061 at 72.276 kb on + strand, within Shewana3_0061 at 72.420 kb on - strand, within Shewana3_0061 at 72.426 kb on + strand, within Shewana3_0061 at 72.506 kb on - strand, within Shewana3_0061 at 72.551 kb on - strand, within Shewana3_0061 at 72.551 kb on - strand, within Shewana3_0061 at 72.579 kb on - strand, within Shewana3_0061 at 72.632 kb on - strand, within Shewana3_0061
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 69,699 + Shewana3_0058 0.73 +1.4 69,699 + Shewana3_0058 0.73 +0.5 69,860 + -0.4 69,907 + -0.8 69,927 + -0.8 69,927 + -0.3 69,927 + +0.1 69,935 - -0.8 69,935 - -0.3 69,935 - +2.0 69,935 - -0.9 70,150 - Shewana3_0059 0.32 -0.1 70,151 - Shewana3_0059 0.32 -0.3 70,339 + Shewana3_0059 0.59 -0.6 70,386 + Shewana3_0059 0.66 +0.5 70,399 + Shewana3_0059 0.68 +0.1 70,454 + Shewana3_0059 0.76 +0.3 70,462 - Shewana3_0059 0.77 -0.7 70,462 - Shewana3_0059 0.77 -0.9 70,649 - -0.6 70,673 - +0.5 70,733 + Shewana3_0060 0.11 -1.1 70,734 + Shewana3_0060 0.11 +0.2 70,742 - Shewana3_0060 0.12 -1.1 70,779 - Shewana3_0060 0.15 -0.4 70,779 - Shewana3_0060 0.15 +0.3 70,816 - Shewana3_0060 0.19 -0.8 70,823 - Shewana3_0060 0.19 -0.7 70,823 - Shewana3_0060 0.19 -0.3 70,828 - Shewana3_0060 0.20 -1.1 70,850 + Shewana3_0060 0.22 +1.4 70,876 - Shewana3_0060 0.24 -0.3 70,907 + Shewana3_0060 0.27 -0.2 70,915 - Shewana3_0060 0.28 +0.1 71,019 - Shewana3_0060 0.38 -0.6 71,034 + Shewana3_0060 0.40 +0.3 71,185 - Shewana3_0060 0.54 -0.4 71,495 - Shewana3_0060 0.84 -0.6 71,549 - Shewana3_0060 0.89 -0.8 71,571 + -0.2 71,708 + -0.1 71,710 - -0.3 71,937 + -0.5 71,937 + +0.6 72,209 + Shewana3_0061 0.34 -0.9 72,217 - Shewana3_0061 0.35 -0.2 72,276 + Shewana3_0061 0.41 -0.8 72,420 - Shewana3_0061 0.57 -0.2 72,426 + Shewana3_0061 0.57 -0.4 72,506 - Shewana3_0061 0.66 -0.1 72,551 - Shewana3_0061 0.71 +0.4 72,551 - Shewana3_0061 0.71 +0.1 72,579 - Shewana3_0061 0.74 -0.4 72,632 - Shewana3_0061 0.80 +0.1
Or see this region's nucleotide sequence