Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0025 and Shewana3_0026 are separated by 15 nucleotides Shewana3_0026 and Shewana3_0027 are separated by 77 nucleotides
Shewana3_0025: Shewana3_0025 - proline dipeptidase (RefSeq), at 32,031 to 33,350
_0025
Shewana3_0026: Shewana3_0026 - hypothetical protein (RefSeq), at 33,366 to 33,980
_0026
Shewana3_0027: Shewana3_0027 - TrkH family potassium uptake protein (RefSeq), at 34,058 to 35,515
_0027
Position (kb)
33
34 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 32.433 kb on - strand, within Shewana3_0025 at 32.529 kb on + strand, within Shewana3_0025 at 32.539 kb on + strand, within Shewana3_0025 at 32.624 kb on + strand, within Shewana3_0025 at 32.635 kb on + strand, within Shewana3_0025 at 32.663 kb on - strand, within Shewana3_0025 at 32.674 kb on - strand, within Shewana3_0025 at 32.847 kb on + strand, within Shewana3_0025 at 32.892 kb on + strand, within Shewana3_0025 at 32.892 kb on + strand, within Shewana3_0025 at 32.895 kb on - strand, within Shewana3_0025 at 32.976 kb on + strand, within Shewana3_0025 at 32.976 kb on + strand, within Shewana3_0025 at 32.984 kb on - strand, within Shewana3_0025 at 32.984 kb on - strand, within Shewana3_0025 at 32.984 kb on - strand, within Shewana3_0025 at 32.984 kb on - strand, within Shewana3_0025 at 32.984 kb on - strand, within Shewana3_0025 at 33.012 kb on + strand, within Shewana3_0025 at 33.255 kb on - strand at 33.358 kb on - strand at 33.358 kb on - strand at 33.368 kb on + strand at 33.626 kb on + strand, within Shewana3_0026 at 33.632 kb on - strand, within Shewana3_0026 at 33.738 kb on + strand, within Shewana3_0026 at 33.739 kb on + strand, within Shewana3_0026 at 33.747 kb on - strand, within Shewana3_0026 at 33.948 kb on - strand at 33.985 kb on - strand at 34.249 kb on - strand, within Shewana3_0027 at 34.292 kb on + strand, within Shewana3_0027 at 34.326 kb on + strand, within Shewana3_0027 at 34.426 kb on + strand, within Shewana3_0027 at 34.631 kb on - strand, within Shewana3_0027
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 32,433 - Shewana3_0025 0.30 -0.4 32,529 + Shewana3_0025 0.38 -0.1 32,539 + Shewana3_0025 0.38 -0.8 32,624 + Shewana3_0025 0.45 +0.1 32,635 + Shewana3_0025 0.46 -0.2 32,663 - Shewana3_0025 0.48 +1.4 32,674 - Shewana3_0025 0.49 +0.9 32,847 + Shewana3_0025 0.62 -0.2 32,892 + Shewana3_0025 0.65 +0.1 32,892 + Shewana3_0025 0.65 +0.2 32,895 - Shewana3_0025 0.65 +0.4 32,976 + Shewana3_0025 0.72 -0.5 32,976 + Shewana3_0025 0.72 -0.5 32,984 - Shewana3_0025 0.72 +0.8 32,984 - Shewana3_0025 0.72 -0.2 32,984 - Shewana3_0025 0.72 -0.1 32,984 - Shewana3_0025 0.72 +0.1 32,984 - Shewana3_0025 0.72 +0.5 33,012 + Shewana3_0025 0.74 -1.2 33,255 - -0.4 33,358 - -0.1 33,358 - -1.1 33,368 + -1.1 33,626 + Shewana3_0026 0.42 -0.3 33,632 - Shewana3_0026 0.43 -3.7 33,738 + Shewana3_0026 0.60 -1.1 33,739 + Shewana3_0026 0.61 -0.9 33,747 - Shewana3_0026 0.62 -0.6 33,948 - +0.6 33,985 - +0.7 34,249 - Shewana3_0027 0.13 +0.3 34,292 + Shewana3_0027 0.16 -0.2 34,326 + Shewana3_0027 0.18 +0.8 34,426 + Shewana3_0027 0.25 +0.3 34,631 - Shewana3_0027 0.39 +0.7
Or see this region's nucleotide sequence