Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0016

Experiment: Carbon source Sucrose 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0015 and glyS are separated by 63 nucleotidesglyS and glyQ are separated by 9 nucleotides Shewana3_0015: Shewana3_0015 - putative signal transduction protein (RefSeq), at 17,706 to 18,749 _0015 Shewana3_0016: glyS - glycyl-tRNA synthetase subunit beta (RefSeq), at 18,813 to 20,879 glyS Shewana3_0017: glyQ - glycyl-tRNA synthetase subunit alpha (RefSeq), at 20,889 to 21,794 glyQ Position (kb) 18 19 20 21Strain fitness (log2 ratio) -3 -2 -1 0 1at 17.845 kb on + strand, within Shewana3_0015at 17.876 kb on + strand, within Shewana3_0015at 18.064 kb on - strand, within Shewana3_0015at 18.125 kb on + strand, within Shewana3_0015at 18.161 kb on + strand, within Shewana3_0015at 18.161 kb on + strand, within Shewana3_0015at 18.204 kb on - strand, within Shewana3_0015at 18.672 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
remove
17,845 + Shewana3_0015 0.13 -0.7
17,876 + Shewana3_0015 0.16 -0.5
18,064 - Shewana3_0015 0.34 -0.7
18,125 + Shewana3_0015 0.40 -0.6
18,161 + Shewana3_0015 0.44 +0.8
18,161 + Shewana3_0015 0.44 -3.7
18,204 - Shewana3_0015 0.48 +0.1
18,672 - -0.8

Or see this region's nucleotide sequence