Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0006

Experiment: Carbon source Sucrose 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttrmE and Shewana3_0006 are separated by 103 nucleotidesShewana3_0006 and Shewana3_0007 are separated by 3 nucleotidesShewana3_0007 and Shewana3_0008 overlap by 34 nucleotides Shewana3_0005: trmE - tRNA modification GTPase TrmE (RefSeq), at 5,376 to 6,737 trmE Shewana3_0006: Shewana3_0006 - protein translocase subunit yidC (RefSeq), at 6,841 to 8,466 _0006 Shewana3_0007: Shewana3_0007 - hypothetical protein (RefSeq), at 8,470 to 8,724 _0007 Shewana3_0008: Shewana3_0008 - ribonuclease P protein component (RefSeq), at 8,691 to 9,047 _0008 Position (kb) 6 7 8 9Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 6.126 kb on + strand, within trmEat 6.126 kb on + strand, within trmEat 6.129 kb on - strandat 6.357 kb on + strand, within trmEat 6.569 kb on - strand, within trmEat 6.604 kb on + strandat 6.612 kb on + strandat 6.725 kb on + strandat 6.745 kb on - strandat 8.650 kb on - strand, within Shewana3_0007at 9.372 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
remove
6,126 + trmE Shewana3_0005 0.55 -1.1
6,126 + trmE Shewana3_0005 0.55 -2.7
6,129 - -0.7
6,357 + trmE Shewana3_0005 0.72 -4.1
6,569 - trmE Shewana3_0005 0.88 -3.1
6,604 + -2.9
6,612 + -1.8
6,725 + -2.0
6,745 - -0.9
8,650 - Shewana3_0007 0.71 -0.0
9,372 + +0.2

Or see this region's nucleotide sequence