Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4384 and Shewana3_4385 are separated by 11 nucleotides Shewana3_4385 and Shewana3_4386 are separated by 8 nucleotides
Shewana3_4384: Shewana3_4384 - CzcA family heavy metal efflux protein (RefSeq), at 269,236 to 272,379
_4384
Shewana3_4385: Shewana3_4385 - secretion protein HlyD (RefSeq), at 272,391 to 273,635
_4385
Shewana3_4386: Shewana3_4386 - outer membrane efflux protein (RefSeq), at 273,644 to 274,927
_4386
Position (kb) 272
273
274 Strain fitness (log2 ratio) -2
-1
0
1 at 271.502 kb on + strand, within Shewana3_4384 at 271.672 kb on + strand, within Shewana3_4384 at 271.752 kb on + strand, within Shewana3_4384 at 271.839 kb on + strand, within Shewana3_4384 at 271.850 kb on + strand, within Shewana3_4384 at 271.850 kb on + strand, within Shewana3_4384 at 271.858 kb on - strand, within Shewana3_4384 at 272.019 kb on + strand, within Shewana3_4384 at 272.104 kb on - strand at 272.134 kb on + strand at 272.142 kb on - strand at 272.142 kb on - strand at 272.149 kb on + strand at 272.183 kb on + strand at 272.191 kb on - strand at 272.206 kb on - strand at 272.251 kb on + strand at 272.496 kb on - strand at 272.538 kb on + strand, within Shewana3_4385 at 272.553 kb on - strand, within Shewana3_4385 at 272.633 kb on + strand, within Shewana3_4385 at 272.872 kb on + strand, within Shewana3_4385 at 273.031 kb on - strand, within Shewana3_4385 at 273.485 kb on + strand, within Shewana3_4385 at 273.493 kb on - strand, within Shewana3_4385 at 273.514 kb on + strand at 273.766 kb on + strand at 273.827 kb on + strand, within Shewana3_4386 at 273.858 kb on - strand, within Shewana3_4386 at 273.902 kb on - strand, within Shewana3_4386 at 274.047 kb on + strand, within Shewana3_4386 at 274.048 kb on + strand, within Shewana3_4386 at 274.195 kb on - strand, within Shewana3_4386 at 274.245 kb on + strand, within Shewana3_4386 at 274.253 kb on - strand, within Shewana3_4386 at 274.253 kb on - strand, within Shewana3_4386 at 274.335 kb on + strand, within Shewana3_4386 at 274.343 kb on - strand, within Shewana3_4386 at 274.363 kb on - strand, within Shewana3_4386 at 274.513 kb on - strand, within Shewana3_4386
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 271,502 + Shewana3_4384 0.72 +0.6 271,672 + Shewana3_4384 0.77 -0.9 271,752 + Shewana3_4384 0.80 -0.9 271,839 + Shewana3_4384 0.83 -1.1 271,850 + Shewana3_4384 0.83 +0.4 271,850 + Shewana3_4384 0.83 -0.8 271,858 - Shewana3_4384 0.83 +0.5 272,019 + Shewana3_4384 0.89 -1.6 272,104 - -0.2 272,134 + -1.2 272,142 - +0.1 272,142 - -0.3 272,149 + +0.3 272,183 + -0.7 272,191 - +0.1 272,206 - -0.1 272,251 + -1.4 272,496 - -0.4 272,538 + Shewana3_4385 0.12 +0.1 272,553 - Shewana3_4385 0.13 -0.0 272,633 + Shewana3_4385 0.19 -0.5 272,872 + Shewana3_4385 0.39 -0.7 273,031 - Shewana3_4385 0.51 +0.3 273,485 + Shewana3_4385 0.88 -0.1 273,493 - Shewana3_4385 0.89 -0.4 273,514 + +0.4 273,766 + +0.6 273,827 + Shewana3_4386 0.14 -0.3 273,858 - Shewana3_4386 0.17 -0.3 273,902 - Shewana3_4386 0.20 +0.4 274,047 + Shewana3_4386 0.31 -0.4 274,048 + Shewana3_4386 0.31 +0.3 274,195 - Shewana3_4386 0.43 -1.8 274,245 + Shewana3_4386 0.47 -0.4 274,253 - Shewana3_4386 0.47 -0.1 274,253 - Shewana3_4386 0.47 -0.8 274,335 + Shewana3_4386 0.54 +0.8 274,343 - Shewana3_4386 0.54 -0.3 274,363 - Shewana3_4386 0.56 -0.3 274,513 - Shewana3_4386 0.68 +0.1
Or see this region's nucleotide sequence