Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4331 and Shewana3_4332 are separated by 205 nucleotides Shewana3_4332 and Shewana3_4333 are separated by 54 nucleotides Shewana3_4333 and Shewana3_4334 are separated by 31 nucleotides Shewana3_4334 and Shewana3_4335 are separated by 27 nucleotides
Shewana3_4331: Shewana3_4331 - methionine sulfoxide reductase A (RefSeq), at 221,669 to 222,331
_4331
Shewana3_4332: Shewana3_4332 - hypothetical protein (RefSeq), at 222,537 to 222,782
_4332
Shewana3_4333: Shewana3_4333 - methionine-R-sulfoxide reductase (RefSeq), at 222,837 to 223,277
_4333
Shewana3_4334: Shewana3_4334 - glutaredoxin (RefSeq), at 223,309 to 223,545
_4334
Shewana3_4335: Shewana3_4335 - peptide methionine sulfoxide reductase (RefSeq), at 223,573 to 224,061
_4335
Position (kb) 222
223 Strain fitness (log2 ratio) -2
-1
0
1 at 221.589 kb on + strand at 221.589 kb on + strand at 221.597 kb on - strand at 221.710 kb on + strand at 221.720 kb on + strand at 221.728 kb on - strand at 221.728 kb on - strand at 221.728 kb on - strand at 222.011 kb on + strand, within Shewana3_4331 at 222.029 kb on - strand, within Shewana3_4331 at 222.081 kb on + strand, within Shewana3_4331 at 222.098 kb on - strand, within Shewana3_4331 at 222.275 kb on - strand at 222.298 kb on - strand at 222.364 kb on + strand at 222.616 kb on - strand, within Shewana3_4332 at 222.641 kb on + strand, within Shewana3_4332 at 222.641 kb on + strand, within Shewana3_4332 at 222.763 kb on - strand at 222.763 kb on - strand at 222.822 kb on - strand at 222.865 kb on - strand at 222.890 kb on + strand, within Shewana3_4333 at 222.890 kb on + strand, within Shewana3_4333 at 222.898 kb on - strand, within Shewana3_4333 at 222.898 kb on - strand, within Shewana3_4333 at 222.988 kb on + strand, within Shewana3_4333 at 223.010 kb on - strand, within Shewana3_4333 at 223.092 kb on + strand, within Shewana3_4333 at 223.239 kb on - strand at 223.673 kb on + strand, within Shewana3_4335 at 223.681 kb on - strand, within Shewana3_4335 at 223.782 kb on - strand, within Shewana3_4335
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 221,589 + -1.1 221,589 + -0.8 221,597 - +0.6 221,710 + -0.6 221,720 + -2.0 221,728 - -1.7 221,728 - -1.3 221,728 - -0.6 222,011 + Shewana3_4331 0.52 -0.1 222,029 - Shewana3_4331 0.54 -0.6 222,081 + Shewana3_4331 0.62 -1.4 222,098 - Shewana3_4331 0.65 -0.4 222,275 - -1.2 222,298 - -0.3 222,364 + +0.1 222,616 - Shewana3_4332 0.32 +0.9 222,641 + Shewana3_4332 0.42 +0.3 222,641 + Shewana3_4332 0.42 +0.4 222,763 - +0.5 222,763 - +0.3 222,822 - +0.6 222,865 - +0.2 222,890 + Shewana3_4333 0.12 -1.1 222,890 + Shewana3_4333 0.12 +0.9 222,898 - Shewana3_4333 0.14 +0.6 222,898 - Shewana3_4333 0.14 +0.1 222,988 + Shewana3_4333 0.34 -0.5 223,010 - Shewana3_4333 0.39 -0.1 223,092 + Shewana3_4333 0.58 +1.1 223,239 - -0.4 223,673 + Shewana3_4335 0.20 +0.4 223,681 - Shewana3_4335 0.22 +0.5 223,782 - Shewana3_4335 0.43 -1.9
Or see this region's nucleotide sequence