Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4295 and Shewana3_4296 overlap by 8 nucleotides Shewana3_4296 and Shewana3_4297 are separated by 189 nucleotides
Shewana3_4295: Shewana3_4295 - sensor kinase CusS (RefSeq), at 178,084 to 179,559
_4295
Shewana3_4296: Shewana3_4296 - DNA-binding transcriptional activator CusR (RefSeq), at 179,552 to 180,232
_4296
Shewana3_4297: Shewana3_4297 - copper/silver efflux system outer membrane protein CusC (RefSeq), at 180,422 to 181,807
_4297
Position (kb) 179
180
181 Strain fitness (log2 ratio) -1
0
1 at 178.575 kb on + strand, within Shewana3_4295 at 178.638 kb on - strand, within Shewana3_4295 at 178.649 kb on + strand, within Shewana3_4295 at 179.161 kb on - strand, within Shewana3_4295 at 179.172 kb on - strand, within Shewana3_4295 at 179.241 kb on + strand, within Shewana3_4295 at 179.284 kb on - strand, within Shewana3_4295 at 179.290 kb on - strand, within Shewana3_4295 at 179.373 kb on + strand, within Shewana3_4295 at 179.383 kb on + strand, within Shewana3_4295 at 179.383 kb on + strand, within Shewana3_4295 at 179.391 kb on - strand, within Shewana3_4295 at 179.770 kb on + strand, within Shewana3_4296 at 179.890 kb on - strand, within Shewana3_4296 at 179.911 kb on - strand, within Shewana3_4296 at 179.927 kb on + strand, within Shewana3_4296 at 179.935 kb on - strand, within Shewana3_4296 at 180.020 kb on + strand, within Shewana3_4296 at 180.178 kb on - strand at 180.318 kb on - strand at 180.444 kb on + strand at 180.691 kb on - strand, within Shewana3_4297 at 180.905 kb on + strand, within Shewana3_4297 at 181.009 kb on + strand, within Shewana3_4297 at 181.017 kb on - strand, within Shewana3_4297 at 181.017 kb on - strand, within Shewana3_4297 at 181.062 kb on + strand, within Shewana3_4297 at 181.062 kb on + strand, within Shewana3_4297 at 181.070 kb on - strand, within Shewana3_4297
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 178,575 + Shewana3_4295 0.33 -0.8 178,638 - Shewana3_4295 0.38 -1.2 178,649 + Shewana3_4295 0.38 +0.8 179,161 - Shewana3_4295 0.73 -0.2 179,172 - Shewana3_4295 0.74 -0.6 179,241 + Shewana3_4295 0.78 +1.1 179,284 - Shewana3_4295 0.81 +0.3 179,290 - Shewana3_4295 0.82 -0.0 179,373 + Shewana3_4295 0.87 +0.6 179,383 + Shewana3_4295 0.88 +0.2 179,383 + Shewana3_4295 0.88 +0.1 179,391 - Shewana3_4295 0.89 +0.8 179,770 + Shewana3_4296 0.32 +1.0 179,890 - Shewana3_4296 0.50 -0.5 179,911 - Shewana3_4296 0.53 +0.9 179,927 + Shewana3_4296 0.55 -0.4 179,935 - Shewana3_4296 0.56 +0.6 180,020 + Shewana3_4296 0.69 +0.4 180,178 - +0.0 180,318 - -0.2 180,444 + +0.8 180,691 - Shewana3_4297 0.19 -0.8 180,905 + Shewana3_4297 0.35 -0.0 181,009 + Shewana3_4297 0.42 +0.6 181,017 - Shewana3_4297 0.43 -0.7 181,017 - Shewana3_4297 0.43 -0.2 181,062 + Shewana3_4297 0.46 -1.0 181,062 + Shewana3_4297 0.46 +0.3 181,070 - Shewana3_4297 0.47 -1.5
Or see this region's nucleotide sequence