Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4252 and Shewana3_4253 are separated by 2 nucleotides Shewana3_4253 and Shewana3_4254 overlap by 14 nucleotides
Shewana3_4252: Shewana3_4252 - phage integrase family protein (RefSeq), at 127,520 to 129,604
_4252
Shewana3_4253: Shewana3_4253 - hypothetical protein (RefSeq), at 129,607 to 131,877
_4253
Shewana3_4254: Shewana3_4254 - phage integrase family protein (RefSeq), at 131,864 to 133,129
_4254
Position (kb) 129
130
131
132 Strain fitness (log2 ratio) -1
0
1 at 128.862 kb on + strand, within Shewana3_4252 at 128.885 kb on + strand, within Shewana3_4252 at 128.908 kb on + strand, within Shewana3_4252 at 128.938 kb on - strand, within Shewana3_4252 at 129.025 kb on + strand, within Shewana3_4252 at 129.063 kb on - strand, within Shewana3_4252 at 129.199 kb on - strand, within Shewana3_4252 at 129.257 kb on - strand, within Shewana3_4252 at 129.366 kb on - strand, within Shewana3_4252 at 129.368 kb on - strand, within Shewana3_4252 at 129.510 kb on - strand at 129.529 kb on + strand at 129.529 kb on + strand at 129.537 kb on - strand at 129.537 kb on - strand at 129.636 kb on + strand at 129.654 kb on + strand at 129.679 kb on + strand at 130.037 kb on + strand, within Shewana3_4253 at 130.109 kb on + strand, within Shewana3_4253 at 130.139 kb on + strand, within Shewana3_4253 at 130.312 kb on + strand, within Shewana3_4253 at 130.315 kb on - strand, within Shewana3_4253 at 130.412 kb on + strand, within Shewana3_4253 at 130.580 kb on + strand, within Shewana3_4253 at 130.588 kb on - strand, within Shewana3_4253 at 130.617 kb on - strand, within Shewana3_4253 at 130.754 kb on - strand, within Shewana3_4253 at 130.780 kb on - strand, within Shewana3_4253 at 130.791 kb on + strand, within Shewana3_4253 at 130.861 kb on - strand, within Shewana3_4253 at 130.953 kb on - strand, within Shewana3_4253 at 131.049 kb on - strand, within Shewana3_4253 at 131.051 kb on + strand, within Shewana3_4253 at 131.114 kb on - strand, within Shewana3_4253 at 131.131 kb on + strand, within Shewana3_4253 at 131.206 kb on - strand, within Shewana3_4253 at 131.361 kb on - strand, within Shewana3_4253 at 131.419 kb on - strand, within Shewana3_4253 at 131.457 kb on + strand, within Shewana3_4253 at 131.476 kb on - strand, within Shewana3_4253 at 131.761 kb on - strand at 131.780 kb on - strand at 131.827 kb on + strand at 131.915 kb on - strand at 131.944 kb on + strand at 131.982 kb on - strand at 132.015 kb on - strand, within Shewana3_4254 at 132.042 kb on + strand, within Shewana3_4254 at 132.060 kb on + strand, within Shewana3_4254 at 132.060 kb on + strand, within Shewana3_4254 at 132.066 kb on - strand, within Shewana3_4254 at 132.246 kb on + strand, within Shewana3_4254 at 132.404 kb on + strand, within Shewana3_4254 at 132.587 kb on + strand, within Shewana3_4254 at 132.597 kb on - strand, within Shewana3_4254 at 132.660 kb on + strand, within Shewana3_4254 at 132.714 kb on + strand, within Shewana3_4254 at 132.714 kb on + strand, within Shewana3_4254 at 132.745 kb on - strand, within Shewana3_4254 at 132.745 kb on - strand, within Shewana3_4254 at 132.780 kb on - strand, within Shewana3_4254
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 128,862 + Shewana3_4252 0.64 -0.0 128,885 + Shewana3_4252 0.65 +0.4 128,908 + Shewana3_4252 0.67 -1.1 128,938 - Shewana3_4252 0.68 -0.7 129,025 + Shewana3_4252 0.72 -0.4 129,063 - Shewana3_4252 0.74 +0.0 129,199 - Shewana3_4252 0.81 +0.1 129,257 - Shewana3_4252 0.83 -0.1 129,366 - Shewana3_4252 0.89 +0.1 129,368 - Shewana3_4252 0.89 -0.5 129,510 - -0.1 129,529 + -0.3 129,529 + -0.7 129,537 - +0.7 129,537 - +0.0 129,636 + -0.0 129,654 + +0.2 129,679 + +0.1 130,037 + Shewana3_4253 0.19 -1.2 130,109 + Shewana3_4253 0.22 +0.5 130,139 + Shewana3_4253 0.23 +0.6 130,312 + Shewana3_4253 0.31 +0.1 130,315 - Shewana3_4253 0.31 +0.6 130,412 + Shewana3_4253 0.35 +0.7 130,580 + Shewana3_4253 0.43 +0.7 130,588 - Shewana3_4253 0.43 +0.4 130,617 - Shewana3_4253 0.44 -0.2 130,754 - Shewana3_4253 0.51 -0.1 130,780 - Shewana3_4253 0.52 +0.8 130,791 + Shewana3_4253 0.52 -0.4 130,861 - Shewana3_4253 0.55 -0.8 130,953 - Shewana3_4253 0.59 +0.2 131,049 - Shewana3_4253 0.63 +0.6 131,051 + Shewana3_4253 0.64 +0.9 131,114 - Shewana3_4253 0.66 -1.2 131,131 + Shewana3_4253 0.67 -0.0 131,206 - Shewana3_4253 0.70 -0.3 131,361 - Shewana3_4253 0.77 +0.2 131,419 - Shewana3_4253 0.80 -0.4 131,457 + Shewana3_4253 0.81 +0.4 131,476 - Shewana3_4253 0.82 +0.7 131,761 - +1.2 131,780 - +0.1 131,827 + +0.4 131,915 - +0.3 131,944 + +0.3 131,982 - -0.0 132,015 - Shewana3_4254 0.12 -0.2 132,042 + Shewana3_4254 0.14 +0.5 132,060 + Shewana3_4254 0.15 +0.7 132,060 + Shewana3_4254 0.15 +0.1 132,066 - Shewana3_4254 0.16 -0.1 132,246 + Shewana3_4254 0.30 -0.3 132,404 + Shewana3_4254 0.43 +0.2 132,587 + Shewana3_4254 0.57 +0.3 132,597 - Shewana3_4254 0.58 -0.2 132,660 + Shewana3_4254 0.63 -0.1 132,714 + Shewana3_4254 0.67 -1.0 132,714 + Shewana3_4254 0.67 -0.2 132,745 - Shewana3_4254 0.70 +0.2 132,745 - Shewana3_4254 0.70 +0.3 132,780 - Shewana3_4254 0.72 +0.9
Or see this region's nucleotide sequence