Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4242

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4241 and Shewana3_4242 overlap by 1 nucleotidesShewana3_4242 and Shewana3_4243 are separated by 11 nucleotidesShewana3_4243 and Shewana3_4244 are separated by 17 nucleotides Shewana3_4241: Shewana3_4241 - restriction modification system DNA specificity subunit (RefSeq), at 114,945 to 116,180 _4241 Shewana3_4242: Shewana3_4242 - hypothetical protein (RefSeq), at 116,180 to 116,785 _4242 Shewana3_4243: Shewana3_4243 - hypothetical protein (RefSeq), at 116,797 to 117,114 _4243 Shewana3_4244: Shewana3_4244 - HsdR family type I site-specific deoxyribonuclease (RefSeq), at 117,132 to 120,386 _4244 Position (kb) 116 117Strain fitness (log2 ratio) -1 0 1at 115.239 kb on + strand, within Shewana3_4241at 115.239 kb on + strand, within Shewana3_4241at 115.314 kb on - strand, within Shewana3_4241at 115.372 kb on + strand, within Shewana3_4241at 115.373 kb on - strand, within Shewana3_4241at 115.382 kb on - strand, within Shewana3_4241at 115.477 kb on + strand, within Shewana3_4241at 115.499 kb on - strand, within Shewana3_4241at 115.709 kb on + strand, within Shewana3_4241at 115.835 kb on - strand, within Shewana3_4241at 115.840 kb on - strand, within Shewana3_4241at 115.840 kb on - strand, within Shewana3_4241at 115.845 kb on + strand, within Shewana3_4241at 115.941 kb on + strand, within Shewana3_4241at 115.998 kb on + strand, within Shewana3_4241at 116.183 kb on - strandat 116.251 kb on - strand, within Shewana3_4242at 116.280 kb on - strand, within Shewana3_4242at 116.285 kb on - strand, within Shewana3_4242at 116.527 kb on - strand, within Shewana3_4242at 116.607 kb on + strand, within Shewana3_4242at 116.665 kb on + strand, within Shewana3_4242at 116.721 kb on + strand, within Shewana3_4242at 116.721 kb on + strand, within Shewana3_4242at 116.856 kb on + strand, within Shewana3_4243at 116.866 kb on + strand, within Shewana3_4243at 116.918 kb on + strand, within Shewana3_4243at 117.050 kb on + strand, within Shewana3_4243at 117.060 kb on + strand, within Shewana3_4243at 117.068 kb on - strand, within Shewana3_4243at 117.153 kb on + strandat 117.158 kb on + strandat 117.180 kb on - strandat 117.294 kb on - strandat 117.302 kb on - strandat 117.361 kb on + strandat 117.361 kb on + strandat 117.361 kb on + strandat 117.369 kb on - strandat 117.369 kb on - strandat 117.371 kb on + strandat 117.423 kb on + strandat 117.565 kb on + strand, within Shewana3_4244at 117.565 kb on + strand, within Shewana3_4244at 117.586 kb on - strand, within Shewana3_4244at 117.593 kb on - strand, within Shewana3_4244at 117.656 kb on - strand, within Shewana3_4244at 117.667 kb on - strand, within Shewana3_4244

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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115,239 + Shewana3_4241 0.24 +0.7
115,239 + Shewana3_4241 0.24 +0.8
115,314 - Shewana3_4241 0.30 -0.0
115,372 + Shewana3_4241 0.35 -0.7
115,373 - Shewana3_4241 0.35 +0.7
115,382 - Shewana3_4241 0.35 +1.0
115,477 + Shewana3_4241 0.43 -0.8
115,499 - Shewana3_4241 0.45 +0.7
115,709 + Shewana3_4241 0.62 -0.1
115,835 - Shewana3_4241 0.72 +0.1
115,840 - Shewana3_4241 0.72 -1.2
115,840 - Shewana3_4241 0.72 +0.3
115,845 + Shewana3_4241 0.73 +0.1
115,941 + Shewana3_4241 0.81 -0.5
115,998 + Shewana3_4241 0.85 -0.5
116,183 - -0.1
116,251 - Shewana3_4242 0.12 +0.6
116,280 - Shewana3_4242 0.17 -0.1
116,285 - Shewana3_4242 0.17 -1.5
116,527 - Shewana3_4242 0.57 -0.1
116,607 + Shewana3_4242 0.70 -1.0
116,665 + Shewana3_4242 0.80 -0.3
116,721 + Shewana3_4242 0.89 -0.5
116,721 + Shewana3_4242 0.89 -0.9
116,856 + Shewana3_4243 0.19 +0.0
116,866 + Shewana3_4243 0.22 -0.4
116,918 + Shewana3_4243 0.38 -0.7
117,050 + Shewana3_4243 0.80 -0.4
117,060 + Shewana3_4243 0.83 -0.6
117,068 - Shewana3_4243 0.85 +0.4
117,153 + +0.0
117,158 + +0.0
117,180 - +0.6
117,294 - -0.2
117,302 - +0.9
117,361 + -1.0
117,361 + -0.0
117,361 + +0.0
117,369 - -0.8
117,369 - -0.2
117,371 + +0.8
117,423 + +0.5
117,565 + Shewana3_4244 0.13 -0.0
117,565 + Shewana3_4244 0.13 +0.3
117,586 - Shewana3_4244 0.14 +0.1
117,593 - Shewana3_4244 0.14 -0.7
117,656 - Shewana3_4244 0.16 +1.7
117,667 - Shewana3_4244 0.16 -0.5

Or see this region's nucleotide sequence