Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4215 and Shewana3_4216 are separated by 68 nucleotides Shewana3_4216 and Shewana3_4217 are separated by 128 nucleotides Shewana3_4217 and Shewana3_4218 are separated by 30 nucleotides
Shewana3_4215: Shewana3_4215 - helicase domain-containing protein (RefSeq), at 85,589 to 87,583
_4215
Shewana3_4216: Shewana3_4216 - hypothetical protein (RefSeq), at 87,652 to 88,143
_4216
Shewana3_4217: Shewana3_4217 - putative signal transduction protein (RefSeq), at 88,272 to 88,994
_4217
Shewana3_4218: Shewana3_4218 - Type IV secretory pathway VirB4 components-like protein (RefSeq), at 89,025 to 91,709
_4218
Position (kb)
87
88
89 Strain fitness (log2 ratio)
-1
0
1 at 86.747 kb on - strand, within Shewana3_4215 at 87.076 kb on + strand, within Shewana3_4215 at 87.156 kb on - strand, within Shewana3_4215 at 87.222 kb on - strand, within Shewana3_4215 at 87.247 kb on - strand, within Shewana3_4215 at 87.247 kb on - strand, within Shewana3_4215 at 87.255 kb on + strand, within Shewana3_4215 at 87.407 kb on + strand at 87.488 kb on + strand at 87.579 kb on + strand at 87.823 kb on + strand, within Shewana3_4216 at 87.831 kb on - strand, within Shewana3_4216 at 87.886 kb on + strand, within Shewana3_4216 at 87.956 kb on - strand, within Shewana3_4216 at 88.012 kb on - strand, within Shewana3_4216 at 88.050 kb on + strand, within Shewana3_4216 at 88.216 kb on - strand at 88.445 kb on + strand, within Shewana3_4217 at 88.585 kb on - strand, within Shewana3_4217 at 88.648 kb on + strand, within Shewana3_4217 at 88.771 kb on + strand, within Shewana3_4217 at 88.997 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 86,747 - Shewana3_4215 0.58 -1.4 87,076 + Shewana3_4215 0.75 +0.4 87,156 - Shewana3_4215 0.79 -0.6 87,222 - Shewana3_4215 0.82 -0.0 87,247 - Shewana3_4215 0.83 +0.0 87,247 - Shewana3_4215 0.83 -0.2 87,255 + Shewana3_4215 0.84 -0.7 87,407 + -0.8 87,488 + -0.5 87,579 + -0.1 87,823 + Shewana3_4216 0.35 -0.1 87,831 - Shewana3_4216 0.36 -0.1 87,886 + Shewana3_4216 0.48 -1.5 87,956 - Shewana3_4216 0.62 +0.1 88,012 - Shewana3_4216 0.73 -0.5 88,050 + Shewana3_4216 0.81 -0.7 88,216 - -0.5 88,445 + Shewana3_4217 0.24 -1.0 88,585 - Shewana3_4217 0.43 +0.2 88,648 + Shewana3_4217 0.52 -0.2 88,771 + Shewana3_4217 0.69 -0.6 88,997 + -0.1
Or see this region's nucleotide sequence