Strain Fitness in Cupriavidus basilensis FW507-4G11

Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29560

Experiment: R2A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	R2A
				remove
1,988,268	-			+0.3
1,988,268	-			-0.6
1,988,268	-			-0.3
1,988,268	-			+0.6
1,988,276	+			+0.1
1,988,294	-			+0.2
1,988,299	+			+1.7
1,988,300	-			-0.4
1,988,300	-			-0.3
1,988,300	-			+1.1
1,988,305	+			+1.4
1,988,306	-			-1.0
1,988,306	-			-0.5
1,988,309	+			-2.3
1,988,309	+			-1.0
1,988,310	-			-0.9
1,988,310	-			+0.6
1,988,310	-			+0.3
1,988,310	-			-1.0
1,988,310	-			-0.6
1,988,310	-			-0.3
1,988,357	+			-0.4
1,988,362	-			-0.5
1,988,570	+			+0.2
1,988,646	+			-0.0
1,988,653	+			-0.7
1,988,653	+			-0.4
1,988,654	-			-0.6
1,988,660	+			+0.5
1,988,660	+			+1.1
1,988,661	-			-0.2
1,988,661	-			+0.2
1,988,704	+			-0.8
1,988,705	-			-0.7
1,988,716	+			+0.1
1,988,748	+			-0.9
1,988,748	+			+1.0
1,988,749	-			+0.0
1,988,749	-			+0.7
1,988,749	-			+0.1
1,988,749	-			+0.7
1,988,801	+			+0.4
1,988,802	-			+0.2
1,988,802	-			-0.0
1,988,805	+			+0.3
1,988,806	-			+0.8
1,988,862	+			-0.7
1,988,862	+			-0.1
1,988,863	-			-0.8
1,988,868	+			+0.5
1,988,868	+			+0.4
1,988,869	-			+0.1
1,988,869	-			+0.5
1,988,924	-			+0.2
1,988,927	+			-0.4
1,988,927	+			-1.2
1,988,927	+			-0.6
1,988,927	+			+0.7
1,988,928	-			+0.0
1,988,928	-			+0.4
1,988,928	-			-0.2
1,988,967	-			+0.9
1,988,967	-			+0.4
1,988,984	-			-0.8
1,989,014	+			+0.5
1,989,014	+			+0.7
1,989,015	-			-0.6
1,989,056	-			-0.1
1,989,084	-			-0.7
1,989,084	-			+0.3
1,989,084	-			+0.8
1,989,084	-			+1.2
1,989,137	+			+0.3
1,989,138	-			-0.5
1,989,143	+			+0.0
1,989,143	+			-1.3
1,989,206	-			-0.3
1,989,238	+			+0.7
1,989,238	+			+0.5
1,989,239	-			-0.3
1,989,239	-			+0.6
1,989,239	-			-0.6
1,989,239	-			-0.6
1,989,239	-			+0.3
1,989,274	+			-0.2
1,989,274	+			+0.4
1,989,274	+			+1.1
1,989,274	+			-0.0
1,989,274	+			+0.4
1,989,274	+			-0.6
1,989,275	-			+0.7
1,989,275	-			-0.4
1,989,275	-			+0.3
1,989,275	-			+0.1
1,989,275	-			+0.3
1,989,280	+			-0.5
1,989,280	+			-0.1
1,989,280	+			-0.0
1,989,281	-			-0.0
1,989,281	-			+0.2
1,989,327	+	RR42_RS29560	0.13	-0.0
1,989,327	+	RR42_RS29560	0.13	+0.3
1,989,327	+	RR42_RS29560	0.13	-0.6
1,989,327	+	RR42_RS29560	0.13	+0.3
1,989,327	+	RR42_RS29560	0.13	-0.7
1,989,327	+	RR42_RS29560	0.13	-0.3
1,989,328	-	RR42_RS29560	0.13	-0.8
1,989,328	-	RR42_RS29560	0.13	-2.1
1,989,328	-	RR42_RS29560	0.13	+0.2
1,989,362	-	RR42_RS29560	0.17	-0.2
1,989,409	+	RR42_RS29560	0.21	-0.7
1,989,409	+	RR42_RS29560	0.21	+0.9
1,989,409	+	RR42_RS29560	0.21	+0.7
1,989,409	+	RR42_RS29560	0.21	+0.6
1,989,409	+	RR42_RS29560	0.21	+0.1
1,989,409	+	RR42_RS29560	0.21	-0.3
1,989,410	-	RR42_RS29560	0.21	+0.7
1,989,410	-	RR42_RS29560	0.21	+0.2
1,989,410	-	RR42_RS29560	0.21	+0.1
1,989,410	-	RR42_RS29560	0.21	-0.6
1,989,410	-	RR42_RS29560	0.21	-0.6
1,989,410	-	RR42_RS29560	0.21	+0.2
1,989,410	-	RR42_RS29560	0.21	-0.6
1,989,410	-	RR42_RS29560	0.21	+0.7
1,989,451	+	RR42_RS29560	0.25	-0.4
1,989,451	+	RR42_RS29560	0.25	+0.3
1,989,451	+	RR42_RS29560	0.25	-0.1
1,989,452	-	RR42_RS29560	0.25	+0.8
1,989,452	-	RR42_RS29560	0.25	-0.1
1,989,468	+	RR42_RS29560	0.27	+0.1
1,989,478	-	RR42_RS29560	0.28	+0.0
1,989,514	+	RR42_RS29560	0.31	+0.2
1,989,514	+	RR42_RS29560	0.31	+0.3
1,989,514	+	RR42_RS29560	0.31	+0.2
1,989,515	-	RR42_RS29560	0.31	+1.2
1,989,515	-	RR42_RS29560	0.31	-0.5
1,989,515	-	RR42_RS29560	0.31	+0.7
1,989,515	-	RR42_RS29560	0.31	-0.8
1,989,515	-	RR42_RS29560	0.31	+0.0
1,989,534	+	RR42_RS29560	0.33	-1.8
1,989,574	+	RR42_RS29560	0.37	+1.0
1,989,574	+	RR42_RS29560	0.37	+0.5
1,989,575	-	RR42_RS29560	0.37	+0.2
1,989,660	+	RR42_RS29560	0.45	-0.4
1,989,672	+	RR42_RS29560	0.46	+1.3
1,989,760	+	RR42_RS29560	0.54	+0.2
1,989,761	-	RR42_RS29560	0.55	+0.3
1,989,761	-	RR42_RS29560	0.55	+0.3
1,989,761	-	RR42_RS29560	0.55	+0.6
1,989,761	-	RR42_RS29560	0.55	+0.1
1,989,766	+	RR42_RS29560	0.55	-0.6
1,989,767	-	RR42_RS29560	0.55	-0.1
1,989,767	-	RR42_RS29560	0.55	-0.6
1,989,854	+	RR42_RS29560	0.63	+0.5
1,989,854	+	RR42_RS29560	0.63	+0.1
1,989,854	+	RR42_RS29560	0.63	-0.9
1,989,855	-	RR42_RS29560	0.63	+1.1
1,989,855	-	RR42_RS29560	0.63	-0.8
1,989,855	-	RR42_RS29560	0.63	+0.7
1,989,855	-	RR42_RS29560	0.63	+0.5
1,989,856	+	RR42_RS29560	0.64	-1.6
1,989,856	+	RR42_RS29560	0.64	+0.4
1,989,857	-	RR42_RS29560	0.64	+0.9
1,989,857	-	RR42_RS29560	0.64	+0.1
1,989,857	-	RR42_RS29560	0.64	-0.8
1,989,857	-	RR42_RS29560	0.64	-0.8
1,989,857	-	RR42_RS29560	0.64	-0.5
1,989,859	+	RR42_RS29560	0.64	-0.5
1,989,859	+	RR42_RS29560	0.64	-0.6
1,989,859	+	RR42_RS29560	0.64	+0.1
1,989,860	-	RR42_RS29560	0.64	+0.3
1,989,860	-	RR42_RS29560	0.64	-0.5
1,989,860	-	RR42_RS29560	0.64	-0.1
1,989,860	-	RR42_RS29560	0.64	+0.3
1,989,860	-	RR42_RS29560	0.64	-1.1
1,989,860	-	RR42_RS29560	0.64	-1.2
1,989,862	+	RR42_RS29560	0.64	-0.0
1,989,874	+	RR42_RS29560	0.65	-1.0
1,989,875	-	RR42_RS29560	0.65	+0.3
1,989,875	-	RR42_RS29560	0.65	+1.1
1,989,877	+	RR42_RS29560	0.66	+1.0
1,989,878	-	RR42_RS29560	0.66	+0.2
1,989,878	-	RR42_RS29560	0.66	-0.4
1,989,878	-	RR42_RS29560	0.66	-0.6
1,989,878	-	RR42_RS29560	0.66	+0.7
1,989,878	-	RR42_RS29560	0.66	-0.7
1,989,936	+	RR42_RS29560	0.71	-0.3
1,989,937	-	RR42_RS29560	0.71	+0.9
1,989,937	-	RR42_RS29560	0.71	+0.1
1,989,943	+	RR42_RS29560	0.72	-0.1
1,989,944	-	RR42_RS29560	0.72	-0.8
1,989,949	+	RR42_RS29560	0.72	+0.2
1,989,949	+	RR42_RS29560	0.72	+0.1
1,989,949	+	RR42_RS29560	0.72	+0.2
1,989,950	-	RR42_RS29560	0.72	-0.7
1,989,950	-	RR42_RS29560	0.72	+1.3
1,989,950	-	RR42_RS29560	0.72	+0.6
1,989,950	-	RR42_RS29560	0.72	+0.7
1,989,973	+	RR42_RS29560	0.75	+0.7
1,989,974	-	RR42_RS29560	0.75	-0.3
1,989,974	-	RR42_RS29560	0.75	+0.0
1,989,974	-	RR42_RS29560	0.75	-0.0
1,989,991	-	RR42_RS29560	0.76	+0.4
1,989,991	-	RR42_RS29560	0.76	-0.5
1,990,025	+	RR42_RS29560	0.80	+0.2
1,990,026	-	RR42_RS29560	0.80	-2.3
1,990,026	-	RR42_RS29560	0.80	-0.1
1,990,029	-	RR42_RS29560	0.80	+0.5
1,990,043	+	RR42_RS29560	0.81	+0.7
1,990,043	+	RR42_RS29560	0.81	+0.7
1,990,043	+	RR42_RS29560	0.81	+0.2
1,990,056	+	RR42_RS29560	0.83	+0.6
1,990,057	-	RR42_RS29560	0.83	-0.7
1,990,077	-	RR42_RS29560	0.85	+0.7
1,990,077	-	RR42_RS29560	0.85	-0.3
1,990,101	+	RR42_RS29560	0.87	-0.4
1,990,101	+	RR42_RS29560	0.87	+0.4
1,990,101	+	RR42_RS29560	0.87	+0.8
1,990,101	+	RR42_RS29560	0.87	-0.6
1,990,101	+	RR42_RS29560	0.87	-0.2
1,990,101	+	RR42_RS29560	0.87	-0.6
1,990,102	-	RR42_RS29560	0.87	+0.5
1,990,102	-	RR42_RS29560	0.87	-0.8
1,990,102	-	RR42_RS29560	0.87	-0.2
1,990,128	+	RR42_RS29560	0.89	-1.8
1,990,128	+	RR42_RS29560	0.89	+0.9
1,990,129	-	RR42_RS29560	0.89	-0.3
1,990,233	+			-0.0
1,990,238	-			-0.5
1,990,263	+			-0.8
1,990,297	+			-0.6
1,990,329	+			-0.8
1,990,370	-			+0.4
1,990,418	+			-0.1
1,990,561	+			-1.0
1,990,727	-			-0.2
1,990,776	+			-1.1
1,990,786	+			+1.2
1,990,786	+			-0.2
1,990,787	-			-0.3
1,990,790	+			-1.3
1,990,791	-			+0.6
1,990,803	+			+0.2
1,990,851	+			-1.3
1,990,851	+			+0.2
1,990,852	-			-0.1
1,990,898	+			-0.9
1,990,898	+			-0.5
1,990,898	+			-0.4
1,990,898	+			+1.2
1,990,898	+			-2.1
1,990,899	-			-0.1
1,990,899	-			-0.3
1,990,899	-			-0.8
1,990,899	-			+0.7
1,990,899	-			-0.3
1,990,921	+			-0.7
1,990,961	+			+0.1
1,990,961	+			+0.1
1,990,962	-			-0.3
1,990,971	+			+0.3
1,990,972	-			+1.1
1,991,008	+			+0.9
1,991,009	-			-0.9
1,991,009	-			-0.4
1,991,056	+			+1.4
1,991,056	+			-1.3
1,991,057	-			-1.7
1,991,057	-			-1.1
1,991,062	+			-0.4
1,991,062	+			+1.1
1,991,063	-			+0.4
1,991,063	-			+1.0
1,991,087	-			-0.5
1,991,091	+			+0.5
1,991,091	+			-0.2
1,991,092	-			-0.1
1,991,092	-			+0.5
1,991,155	+			-0.3
1,991,156	-			+0.4
1,991,162	+			-0.1
1,991,195	-			-0.2

Or see this region's nucleotide sequence