Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29480

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS29475 and RR42_RS29480 are separated by 240 nucleotidesRR42_RS29480 and RR42_RS29485 are separated by 38 nucleotides RR42_RS29475: RR42_RS29475 - AMP-dependent synthetase, at 1,969,272 to 1,970,918 _RS29475 RR42_RS29480: RR42_RS29480 - AraC family transcriptional regulator, at 1,971,159 to 1,971,929 _RS29480 RR42_RS29485: RR42_RS29485 - fatty-acid--CoA ligase, at 1,971,968 to 1,973,593 _RS29485 Position (kb) 1971 1972Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1970.199 kb on + strand, within RR42_RS29475at 1970.199 kb on + strand, within RR42_RS29475at 1970.200 kb on - strand, within RR42_RS29475at 1970.200 kb on - strand, within RR42_RS29475at 1970.200 kb on - strand, within RR42_RS29475at 1970.200 kb on - strand, within RR42_RS29475at 1970.292 kb on + strand, within RR42_RS29475at 1970.293 kb on - strand, within RR42_RS29475at 1970.293 kb on - strand, within RR42_RS29475at 1970.464 kb on - strand, within RR42_RS29475at 1970.466 kb on + strand, within RR42_RS29475at 1970.466 kb on + strand, within RR42_RS29475at 1970.466 kb on + strand, within RR42_RS29475at 1970.466 kb on + strand, within RR42_RS29475at 1970.466 kb on + strand, within RR42_RS29475at 1970.466 kb on + strand, within RR42_RS29475at 1970.466 kb on + strand, within RR42_RS29475at 1970.467 kb on - strandat 1970.467 kb on - strand, within RR42_RS29475at 1970.467 kb on - strand, within RR42_RS29475at 1970.467 kb on - strand, within RR42_RS29475at 1970.883 kb on + strandat 1970.883 kb on + strandat 1970.883 kb on + strandat 1970.884 kb on - strandat 1970.884 kb on - strandat 1970.884 kb on - strandat 1970.944 kb on + strandat 1970.944 kb on + strandat 1970.945 kb on - strandat 1970.945 kb on - strandat 1970.958 kb on - strandat 1970.958 kb on - strandat 1970.958 kb on - strandat 1970.958 kb on - strandat 1970.994 kb on + strandat 1970.995 kb on - strandat 1971.053 kb on - strandat 1971.222 kb on + strandat 1971.223 kb on - strandat 1971.276 kb on + strand, within RR42_RS29480at 1971.276 kb on + strand, within RR42_RS29480at 1971.276 kb on + strand, within RR42_RS29480at 1971.276 kb on + strand, within RR42_RS29480at 1971.276 kb on + strand, within RR42_RS29480at 1971.277 kb on - strand, within RR42_RS29480at 1971.296 kb on + strand, within RR42_RS29480at 1971.296 kb on + strand, within RR42_RS29480at 1971.357 kb on + strand, within RR42_RS29480at 1971.357 kb on + strand, within RR42_RS29480at 1971.357 kb on + strand, within RR42_RS29480at 1971.357 kb on + strand, within RR42_RS29480at 1971.357 kb on + strand, within RR42_RS29480at 1971.358 kb on - strand, within RR42_RS29480at 1971.358 kb on - strand, within RR42_RS29480at 1971.451 kb on + strand, within RR42_RS29480at 1971.516 kb on + strand, within RR42_RS29480at 1971.517 kb on - strand, within RR42_RS29480at 1971.517 kb on - strand, within RR42_RS29480at 1971.789 kb on + strand, within RR42_RS29480at 1971.789 kb on + strand, within RR42_RS29480at 1971.790 kb on - strand, within RR42_RS29480at 1971.790 kb on - strand, within RR42_RS29480at 1971.790 kb on - strand, within RR42_RS29480at 1971.790 kb on - strand, within RR42_RS29480at 1971.790 kb on - strand, within RR42_RS29480at 1971.790 kb on - strand, within RR42_RS29480at 1971.900 kb on - strandat 1972.021 kb on + strandat 1972.086 kb on + strandat 1972.086 kb on + strandat 1972.086 kb on + strandat 1972.161 kb on + strand, within RR42_RS29485at 1972.161 kb on + strand, within RR42_RS29485at 1972.161 kb on + strand, within RR42_RS29485at 1972.161 kb on + strand, within RR42_RS29485at 1972.161 kb on + strand, within RR42_RS29485at 1972.162 kb on - strand, within RR42_RS29485at 1972.162 kb on - strand, within RR42_RS29485at 1972.162 kb on - strand, within RR42_RS29485at 1972.162 kb on - strand, within RR42_RS29485at 1972.162 kb on - strand, within RR42_RS29485at 1972.162 kb on - strand, within RR42_RS29485at 1972.162 kb on - strand, within RR42_RS29485at 1972.162 kb on - strand, within RR42_RS29485at 1972.164 kb on + strand, within RR42_RS29485at 1972.165 kb on - strandat 1972.286 kb on - strand, within RR42_RS29485at 1972.287 kb on + strand, within RR42_RS29485at 1972.287 kb on + strand, within RR42_RS29485at 1972.287 kb on + strand, within RR42_RS29485at 1972.287 kb on + strand, within RR42_RS29485at 1972.287 kb on + strand, within RR42_RS29485at 1972.287 kb on + strand, within RR42_RS29485at 1972.287 kb on + strand, within RR42_RS29485at 1972.287 kb on + strand, within RR42_RS29485at 1972.287 kb on + strand, within RR42_RS29485at 1972.287 kb on + strand, within RR42_RS29485at 1972.287 kb on + strand, within RR42_RS29485at 1972.287 kb on + strand, within RR42_RS29485at 1972.287 kb on + strand, within RR42_RS29485at 1972.287 kb on + strand, within RR42_RS29485at 1972.287 kb on + strand, within RR42_RS29485at 1972.287 kb on + strand, within RR42_RS29485at 1972.288 kb on - strand, within RR42_RS29485at 1972.288 kb on - strand, within RR42_RS29485at 1972.288 kb on - strand, within RR42_RS29485at 1972.288 kb on - strand, within RR42_RS29485at 1972.288 kb on - strand, within RR42_RS29485at 1972.288 kb on - strand, within RR42_RS29485at 1972.288 kb on - strand, within RR42_RS29485at 1972.288 kb on - strand, within RR42_RS29485at 1972.288 kb on - strand, within RR42_RS29485at 1972.288 kb on - strand, within RR42_RS29485at 1972.288 kb on - strand, within RR42_RS29485at 1972.288 kb on - strand, within RR42_RS29485at 1972.288 kb on - strand, within RR42_RS29485at 1972.288 kb on - strand, within RR42_RS29485at 1972.291 kb on + strand, within RR42_RS29485at 1972.291 kb on + strand, within RR42_RS29485at 1972.292 kb on - strand, within RR42_RS29485at 1972.292 kb on - strand, within RR42_RS29485at 1972.292 kb on - strand, within RR42_RS29485at 1972.292 kb on - strand, within RR42_RS29485at 1972.292 kb on - strand, within RR42_RS29485at 1972.318 kb on + strand, within RR42_RS29485at 1972.320 kb on + strand, within RR42_RS29485at 1972.320 kb on + strand, within RR42_RS29485at 1972.320 kb on + strand, within RR42_RS29485at 1972.321 kb on - strand, within RR42_RS29485at 1972.321 kb on - strand, within RR42_RS29485at 1972.596 kb on + strand, within RR42_RS29485

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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1,970,199 + RR42_RS29475 0.56 -1.0
1,970,199 + RR42_RS29475 0.56 -1.1
1,970,200 - RR42_RS29475 0.56 +0.4
1,970,200 - RR42_RS29475 0.56 -0.8
1,970,200 - RR42_RS29475 0.56 -0.8
1,970,200 - RR42_RS29475 0.56 -1.7
1,970,292 + RR42_RS29475 0.62 +0.7
1,970,293 - RR42_RS29475 0.62 -0.1
1,970,293 - RR42_RS29475 0.62 +0.0
1,970,464 - RR42_RS29475 0.72 -0.1
1,970,466 + RR42_RS29475 0.72 +1.1
1,970,466 + RR42_RS29475 0.72 -2.3
1,970,466 + RR42_RS29475 0.72 +0.4
1,970,466 + RR42_RS29475 0.72 -0.4
1,970,466 + RR42_RS29475 0.72 -0.1
1,970,466 + RR42_RS29475 0.72 -0.3
1,970,466 + RR42_RS29475 0.72 +0.7
1,970,467 - +2.9
1,970,467 - RR42_RS29475 0.73 +0.5
1,970,467 - RR42_RS29475 0.73 -0.6
1,970,467 - RR42_RS29475 0.73 +0.5
1,970,883 + +0.9
1,970,883 + +0.5
1,970,883 + +0.1
1,970,884 - -0.6
1,970,884 - +0.0
1,970,884 - -0.4
1,970,944 + +1.0
1,970,944 + -0.6
1,970,945 - -0.5
1,970,945 - -0.8
1,970,958 - -1.0
1,970,958 - -0.2
1,970,958 - -0.5
1,970,958 - -0.5
1,970,994 + -0.3
1,970,995 - -0.5
1,971,053 - +0.4
1,971,222 + +0.8
1,971,223 - -0.1
1,971,276 + RR42_RS29480 0.15 -0.5
1,971,276 + RR42_RS29480 0.15 -0.8
1,971,276 + RR42_RS29480 0.15 -0.3
1,971,276 + RR42_RS29480 0.15 +0.3
1,971,276 + RR42_RS29480 0.15 -0.2
1,971,277 - RR42_RS29480 0.15 -0.6
1,971,296 + RR42_RS29480 0.18 +0.9
1,971,296 + RR42_RS29480 0.18 +0.3
1,971,357 + RR42_RS29480 0.26 +0.7
1,971,357 + RR42_RS29480 0.26 +1.2
1,971,357 + RR42_RS29480 0.26 +0.0
1,971,357 + RR42_RS29480 0.26 +0.8
1,971,357 + RR42_RS29480 0.26 +0.5
1,971,358 - RR42_RS29480 0.26 +0.4
1,971,358 - RR42_RS29480 0.26 +0.7
1,971,451 + RR42_RS29480 0.38 -1.4
1,971,516 + RR42_RS29480 0.46 +0.4
1,971,517 - RR42_RS29480 0.46 -2.4
1,971,517 - RR42_RS29480 0.46 +1.1
1,971,789 + RR42_RS29480 0.82 -1.8
1,971,789 + RR42_RS29480 0.82 +1.1
1,971,790 - RR42_RS29480 0.82 +0.3
1,971,790 - RR42_RS29480 0.82 +0.1
1,971,790 - RR42_RS29480 0.82 -0.4
1,971,790 - RR42_RS29480 0.82 +0.6
1,971,790 - RR42_RS29480 0.82 -0.4
1,971,790 - RR42_RS29480 0.82 -0.7
1,971,900 - -1.1
1,972,021 + -0.5
1,972,086 + -0.1
1,972,086 + +0.4
1,972,086 + -0.5
1,972,161 + RR42_RS29485 0.12 -0.1
1,972,161 + RR42_RS29485 0.12 +0.5
1,972,161 + RR42_RS29485 0.12 -0.3
1,972,161 + RR42_RS29485 0.12 -0.2
1,972,161 + RR42_RS29485 0.12 -1.6
1,972,162 - RR42_RS29485 0.12 -0.5
1,972,162 - RR42_RS29485 0.12 -0.3
1,972,162 - RR42_RS29485 0.12 -0.1
1,972,162 - RR42_RS29485 0.12 +0.4
1,972,162 - RR42_RS29485 0.12 -1.0
1,972,162 - RR42_RS29485 0.12 +0.1
1,972,162 - RR42_RS29485 0.12 -0.1
1,972,162 - RR42_RS29485 0.12 -0.7
1,972,164 + RR42_RS29485 0.12 +1.3
1,972,165 - +0.7
1,972,286 - RR42_RS29485 0.20 -0.8
1,972,287 + RR42_RS29485 0.20 +0.7
1,972,287 + RR42_RS29485 0.20 +0.5
1,972,287 + RR42_RS29485 0.20 +0.1
1,972,287 + RR42_RS29485 0.20 +0.1
1,972,287 + RR42_RS29485 0.20 +2.5
1,972,287 + RR42_RS29485 0.20 -0.1
1,972,287 + RR42_RS29485 0.20 -0.6
1,972,287 + RR42_RS29485 0.20 +0.6
1,972,287 + RR42_RS29485 0.20 -0.3
1,972,287 + RR42_RS29485 0.20 +0.5
1,972,287 + RR42_RS29485 0.20 -0.6
1,972,287 + RR42_RS29485 0.20 -0.1
1,972,287 + RR42_RS29485 0.20 +0.3
1,972,287 + RR42_RS29485 0.20 -0.0
1,972,287 + RR42_RS29485 0.20 -0.3
1,972,287 + RR42_RS29485 0.20 +0.8
1,972,288 - RR42_RS29485 0.20 -0.1
1,972,288 - RR42_RS29485 0.20 -2.6
1,972,288 - RR42_RS29485 0.20 +0.4
1,972,288 - RR42_RS29485 0.20 -0.7
1,972,288 - RR42_RS29485 0.20 +0.7
1,972,288 - RR42_RS29485 0.20 -0.7
1,972,288 - RR42_RS29485 0.20 -0.2
1,972,288 - RR42_RS29485 0.20 -1.1
1,972,288 - RR42_RS29485 0.20 -0.2
1,972,288 - RR42_RS29485 0.20 -0.3
1,972,288 - RR42_RS29485 0.20 -2.4
1,972,288 - RR42_RS29485 0.20 -0.4
1,972,288 - RR42_RS29485 0.20 +0.3
1,972,288 - RR42_RS29485 0.20 -1.0
1,972,291 + RR42_RS29485 0.20 +0.7
1,972,291 + RR42_RS29485 0.20 +0.5
1,972,292 - RR42_RS29485 0.20 +0.7
1,972,292 - RR42_RS29485 0.20 -0.0
1,972,292 - RR42_RS29485 0.20 -0.3
1,972,292 - RR42_RS29485 0.20 +0.1
1,972,292 - RR42_RS29485 0.20 +0.7
1,972,318 + RR42_RS29485 0.22 -0.0
1,972,320 + RR42_RS29485 0.22 -1.8
1,972,320 + RR42_RS29485 0.22 +0.9
1,972,320 + RR42_RS29485 0.22 +0.5
1,972,321 - RR42_RS29485 0.22 -0.7
1,972,321 - RR42_RS29485 0.22 -0.8
1,972,596 + RR42_RS29485 0.39 +0.1

Or see this region's nucleotide sequence