Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27875

Experiment: R2A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS27870 and RR42_RS27875 are separated by 33 nucleotidesRR42_RS27875 and RR42_RS27880 are separated by 79 nucleotides RR42_RS27870: RR42_RS27870 - 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase, at 1,615,361 to 1,616,245 _RS27870 RR42_RS27875: RR42_RS27875 - 3-(3-hydroxyphenyl)propionate hydroxylase, at 1,616,279 to 1,618,063 _RS27875 RR42_RS27880: RR42_RS27880 - 3-(2,3-dihydroxyphenyl)propionate dioxygenase, at 1,618,143 to 1,619,093 _RS27880 Position (kb) 1616 1617 1618 1619Strain fitness (log2 ratio) -2 -1 0 1 2at 1615.445 kb on + strandat 1615.517 kb on + strand, within RR42_RS27870at 1615.518 kb on - strand, within RR42_RS27870at 1615.931 kb on + strand, within RR42_RS27870at 1615.932 kb on - strand, within RR42_RS27870at 1615.932 kb on - strand, within RR42_RS27870at 1616.024 kb on + strand, within RR42_RS27870at 1616.025 kb on - strand, within RR42_RS27870at 1616.386 kb on - strandat 1616.560 kb on + strand, within RR42_RS27875at 1616.629 kb on + strand, within RR42_RS27875at 1616.792 kb on + strand, within RR42_RS27875at 1616.920 kb on + strand, within RR42_RS27875at 1616.920 kb on + strand, within RR42_RS27875at 1616.920 kb on + strand, within RR42_RS27875at 1616.921 kb on - strand, within RR42_RS27875at 1616.921 kb on - strand, within RR42_RS27875at 1616.921 kb on - strand, within RR42_RS27875at 1616.924 kb on + strand, within RR42_RS27875at 1616.925 kb on - strand, within RR42_RS27875at 1616.925 kb on - strand, within RR42_RS27875at 1616.951 kb on + strand, within RR42_RS27875at 1616.951 kb on + strand, within RR42_RS27875at 1616.952 kb on - strand, within RR42_RS27875at 1617.092 kb on + strand, within RR42_RS27875at 1617.093 kb on - strand, within RR42_RS27875at 1617.210 kb on - strand, within RR42_RS27875at 1617.210 kb on - strand, within RR42_RS27875at 1617.299 kb on + strand, within RR42_RS27875at 1617.300 kb on - strand, within RR42_RS27875at 1617.446 kb on + strand, within RR42_RS27875at 1617.446 kb on + strand, within RR42_RS27875at 1617.706 kb on + strand, within RR42_RS27875at 1617.707 kb on - strand, within RR42_RS27875at 1617.980 kb on - strandat 1618.094 kb on - strandat 1619.002 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A
remove
1,615,445 + +0.2
1,615,517 + RR42_RS27870 0.18 -0.9
1,615,518 - RR42_RS27870 0.18 +0.0
1,615,931 + RR42_RS27870 0.64 -0.3
1,615,932 - RR42_RS27870 0.65 +0.0
1,615,932 - RR42_RS27870 0.65 -0.2
1,616,024 + RR42_RS27870 0.75 -0.4
1,616,025 - RR42_RS27870 0.75 -1.4
1,616,386 - +0.3
1,616,560 + RR42_RS27875 0.16 +0.2
1,616,629 + RR42_RS27875 0.20 -0.7
1,616,792 + RR42_RS27875 0.29 +1.0
1,616,920 + RR42_RS27875 0.36 +0.8
1,616,920 + RR42_RS27875 0.36 +1.8
1,616,920 + RR42_RS27875 0.36 -1.9
1,616,921 - RR42_RS27875 0.36 +0.6
1,616,921 - RR42_RS27875 0.36 -0.0
1,616,921 - RR42_RS27875 0.36 +0.3
1,616,924 + RR42_RS27875 0.36 -0.3
1,616,925 - RR42_RS27875 0.36 +2.4
1,616,925 - RR42_RS27875 0.36 -1.7
1,616,951 + RR42_RS27875 0.38 +0.3
1,616,951 + RR42_RS27875 0.38 +0.5
1,616,952 - RR42_RS27875 0.38 -1.0
1,617,092 + RR42_RS27875 0.46 +0.6
1,617,093 - RR42_RS27875 0.46 -0.1
1,617,210 - RR42_RS27875 0.52 -0.3
1,617,210 - RR42_RS27875 0.52 +0.7
1,617,299 + RR42_RS27875 0.57 +0.2
1,617,300 - RR42_RS27875 0.57 +0.4
1,617,446 + RR42_RS27875 0.65 -0.0
1,617,446 + RR42_RS27875 0.65 +0.2
1,617,706 + RR42_RS27875 0.80 +1.9
1,617,707 - RR42_RS27875 0.80 -0.4
1,617,980 - -0.3
1,618,094 - +1.3
1,619,002 - -0.1

Or see this region's nucleotide sequence