Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20920 and RR42_RS20925 are separated by 278 nucleotides RR42_RS20925 and RR42_RS20930 are separated by 41 nucleotides
RR42_RS20920: RR42_RS20920 - glycoside hydrolase, at 15,731 to 18,355
_RS20920
RR42_RS20925: RR42_RS20925 - Crp/Fnr family transcriptional regulator, at 18,634 to 19,356
_RS20925
RR42_RS20930: RR42_RS20930 - tyrosine protein kinase, at 19,398 to 21,806
_RS20930
Position (kb) 18
19
20 Strain fitness (log2 ratio) -1
0
1 at 17.930 kb on + strand, within RR42_RS20920 at 17.930 kb on + strand, within RR42_RS20920 at 17.931 kb on - strand, within RR42_RS20920 at 17.931 kb on - strand, within RR42_RS20920 at 17.931 kb on - strand, within RR42_RS20920 at 17.931 kb on - strand, within RR42_RS20920 at 17.931 kb on - strand, within RR42_RS20920 at 18.265 kb on - strand at 18.265 kb on - strand at 18.335 kb on + strand at 18.335 kb on + strand at 18.336 kb on - strand at 18.502 kb on + strand at 18.502 kb on + strand at 18.502 kb on + strand at 18.503 kb on - strand at 18.503 kb on - strand at 18.511 kb on + strand at 18.514 kb on + strand at 18.515 kb on - strand at 18.729 kb on - strand, within RR42_RS20925 at 19.019 kb on - strand, within RR42_RS20925 at 19.239 kb on + strand, within RR42_RS20925 at 19.300 kb on + strand at 19.812 kb on + strand, within RR42_RS20930 at 20.184 kb on + strand, within RR42_RS20930 at 20.184 kb on + strand, within RR42_RS20930 at 20.184 kb on + strand, within RR42_RS20930 at 20.185 kb on - strand, within RR42_RS20930 at 20.185 kb on - strand, within RR42_RS20930 at 20.185 kb on - strand, within RR42_RS20930 at 20.185 kb on - strand, within RR42_RS20930 at 20.353 kb on - strand, within RR42_RS20930
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 17,930 + RR42_RS20920 0.84 +0.0 17,930 + RR42_RS20920 0.84 -0.6 17,931 - RR42_RS20920 0.84 -0.6 17,931 - RR42_RS20920 0.84 -1.1 17,931 - RR42_RS20920 0.84 +0.9 17,931 - RR42_RS20920 0.84 +0.1 17,931 - RR42_RS20920 0.84 -1.3 18,265 - -0.4 18,265 - +0.2 18,335 + -0.5 18,335 + -0.1 18,336 - +0.2 18,502 + -0.1 18,502 + +0.0 18,502 + +0.1 18,503 - -0.5 18,503 - -1.3 18,511 + +0.1 18,514 + -1.0 18,515 - +0.4 18,729 - RR42_RS20925 0.13 -0.8 19,019 - RR42_RS20925 0.53 -0.1 19,239 + RR42_RS20925 0.84 -1.6 19,300 + -0.7 19,812 + RR42_RS20930 0.17 +1.4 20,184 + RR42_RS20930 0.33 +0.1 20,184 + RR42_RS20930 0.33 -0.5 20,184 + RR42_RS20930 0.33 -1.1 20,185 - RR42_RS20930 0.33 +0.9 20,185 - RR42_RS20930 0.33 +0.8 20,185 - RR42_RS20930 0.33 +0.6 20,185 - RR42_RS20930 0.33 -0.3 20,353 - RR42_RS20930 0.40 +0.4
Or see this region's nucleotide sequence