Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS16705 and RR42_RS16710 are separated by 195 nucleotides RR42_RS16710 and RR42_RS16715 are separated by 108 nucleotides RR42_RS16715 and RR42_RS16720 are separated by 577 nucleotides
RR42_RS16705: RR42_RS16705 - proline iminopeptidase, at 3,616,221 to 3,617,177
_RS16705
RR42_RS16710: RR42_RS16710 - endoribonuclease L-PSP, at 3,617,373 to 3,617,753
_RS16710
RR42_RS16715: RR42_RS16715 - hypothetical protein, at 3,617,862 to 3,618,164
_RS16715
RR42_RS16720: RR42_RS16720 - hypothetical protein, at 3,618,742 to 3,619,263
_RS16720
Position (kb) 3617
3618 Strain fitness (log2 ratio) -1
0
1
2
3 at 3616.478 kb on + strand, within RR42_RS16705 at 3616.479 kb on - strand, within RR42_RS16705 at 3616.584 kb on + strand, within RR42_RS16705 at 3616.635 kb on + strand, within RR42_RS16705 at 3616.635 kb on + strand, within RR42_RS16705 at 3616.635 kb on + strand, within RR42_RS16705 at 3616.636 kb on - strand, within RR42_RS16705 at 3616.636 kb on - strand, within RR42_RS16705 at 3616.636 kb on - strand, within RR42_RS16705 at 3616.636 kb on - strand, within RR42_RS16705 at 3616.636 kb on - strand, within RR42_RS16705 at 3616.669 kb on - strand, within RR42_RS16705 at 3616.669 kb on - strand, within RR42_RS16705 at 3616.690 kb on + strand, within RR42_RS16705 at 3616.690 kb on + strand, within RR42_RS16705 at 3616.691 kb on - strand, within RR42_RS16705 at 3616.691 kb on - strand, within RR42_RS16705 at 3616.762 kb on - strand, within RR42_RS16705 at 3616.926 kb on + strand, within RR42_RS16705 at 3616.927 kb on - strand, within RR42_RS16705 at 3617.002 kb on + strand, within RR42_RS16705 at 3617.049 kb on + strand, within RR42_RS16705 at 3617.282 kb on + strand at 3617.282 kb on + strand at 3617.283 kb on - strand at 3617.283 kb on - strand at 3617.373 kb on - strand at 3617.373 kb on - strand at 3617.444 kb on + strand, within RR42_RS16710 at 3617.444 kb on + strand, within RR42_RS16710 at 3617.445 kb on - strand, within RR42_RS16710 at 3617.445 kb on - strand, within RR42_RS16710 at 3617.445 kb on - strand, within RR42_RS16710 at 3617.451 kb on + strand, within RR42_RS16710 at 3617.643 kb on + strand, within RR42_RS16710 at 3617.644 kb on - strand, within RR42_RS16710 at 3617.644 kb on - strand, within RR42_RS16710 at 3617.795 kb on - strand at 3618.053 kb on + strand, within RR42_RS16715 at 3618.133 kb on - strand, within RR42_RS16715 at 3618.224 kb on + strand at 3618.319 kb on + strand at 3618.320 kb on - strand at 3618.370 kb on - strand at 3618.371 kb on + strand at 3618.371 kb on - strand at 3618.372 kb on - strand at 3618.372 kb on - strand at 3618.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 3,616,478 + RR42_RS16705 0.27 +0.1 3,616,479 - RR42_RS16705 0.27 -0.8 3,616,584 + RR42_RS16705 0.38 +0.0 3,616,635 + RR42_RS16705 0.43 +1.2 3,616,635 + RR42_RS16705 0.43 +0.1 3,616,635 + RR42_RS16705 0.43 +0.6 3,616,636 - RR42_RS16705 0.43 -0.4 3,616,636 - RR42_RS16705 0.43 +0.3 3,616,636 - RR42_RS16705 0.43 +0.1 3,616,636 - RR42_RS16705 0.43 -0.2 3,616,636 - RR42_RS16705 0.43 -1.0 3,616,669 - RR42_RS16705 0.47 +1.4 3,616,669 - RR42_RS16705 0.47 -0.5 3,616,690 + RR42_RS16705 0.49 -1.1 3,616,690 + RR42_RS16705 0.49 -0.2 3,616,691 - RR42_RS16705 0.49 -0.0 3,616,691 - RR42_RS16705 0.49 -0.1 3,616,762 - RR42_RS16705 0.57 +0.2 3,616,926 + RR42_RS16705 0.74 -0.7 3,616,927 - RR42_RS16705 0.74 +0.1 3,617,002 + RR42_RS16705 0.82 +0.2 3,617,049 + RR42_RS16705 0.87 +0.0 3,617,282 + -1.1 3,617,282 + +3.0 3,617,283 - +0.5 3,617,283 - -0.2 3,617,373 - +0.8 3,617,373 - -0.8 3,617,444 + RR42_RS16710 0.19 +0.4 3,617,444 + RR42_RS16710 0.19 -0.1 3,617,445 - RR42_RS16710 0.19 +0.1 3,617,445 - RR42_RS16710 0.19 +0.6 3,617,445 - RR42_RS16710 0.19 -0.1 3,617,451 + RR42_RS16710 0.20 +0.1 3,617,643 + RR42_RS16710 0.71 +0.8 3,617,644 - RR42_RS16710 0.71 +0.1 3,617,644 - RR42_RS16710 0.71 +0.6 3,617,795 - +1.0 3,618,053 + RR42_RS16715 0.63 +0.1 3,618,133 - RR42_RS16715 0.89 +0.1 3,618,224 + -0.1 3,618,319 + -1.5 3,618,320 - -0.3 3,618,370 - -1.3 3,618,371 + -1.2 3,618,371 - +0.4 3,618,372 - -0.0 3,618,372 - -0.9 3,618,615 - +0.6
Or see this region's nucleotide sequence