Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13305

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS13300 and RR42_RS13305 are separated by 114 nucleotidesRR42_RS13305 and RR42_RS13310 are separated by 531 nucleotides RR42_RS13300: RR42_RS13300 - recombinase RecB, at 2,868,325 to 2,871,240 _RS13300 RR42_RS13305: RR42_RS13305 - hypothetical protein, at 2,871,355 to 2,871,621 _RS13305 RR42_RS13310: RR42_RS13310 - thioredoxin, at 2,872,153 to 2,872,479 _RS13310 Position (kb) 2871 2872Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2871.486 kb on - strand, within RR42_RS13305at 2871.629 kb on - strandat 2871.687 kb on - strandat 2871.777 kb on + strandat 2871.781 kb on + strandat 2871.781 kb on + strandat 2871.784 kb on - strandat 2871.835 kb on + strandat 2871.836 kb on - strandat 2871.857 kb on + strandat 2871.900 kb on + strandat 2871.936 kb on + strandat 2871.988 kb on + strandat 2871.990 kb on + strandat 2871.990 kb on + strandat 2871.993 kb on + strandat 2871.993 kb on + strandat 2871.993 kb on + strandat 2871.993 kb on + strandat 2871.993 kb on + strandat 2871.994 kb on - strandat 2871.994 kb on - strandat 2871.995 kb on + strandat 2871.995 kb on + strandat 2871.995 kb on + strandat 2871.995 kb on + strandat 2871.995 kb on + strandat 2871.995 kb on + strandat 2871.995 kb on + strandat 2871.996 kb on - strandat 2871.996 kb on - strandat 2871.996 kb on - strandat 2872.089 kb on + strandat 2872.089 kb on + strandat 2872.123 kb on + strandat 2872.477 kb on + strandat 2872.481 kb on - strandat 2872.523 kb on + strandat 2872.524 kb on - strandat 2872.576 kb on + strandat 2872.576 kb on + strandat 2872.576 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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2,871,486 - RR42_RS13305 0.49 -0.8
2,871,629 - -1.5
2,871,687 - +0.5
2,871,777 + -0.2
2,871,781 + +0.5
2,871,781 + -0.3
2,871,784 - +0.8
2,871,835 + +0.1
2,871,836 - -0.1
2,871,857 + -0.1
2,871,900 + +0.2
2,871,936 + +0.8
2,871,988 + -0.2
2,871,990 + +0.9
2,871,990 + -0.0
2,871,993 + -1.2
2,871,993 + -1.5
2,871,993 + -0.1
2,871,993 + -2.2
2,871,993 + +0.0
2,871,994 - +0.3
2,871,994 - -1.7
2,871,995 + +0.0
2,871,995 + -0.2
2,871,995 + +0.2
2,871,995 + +0.0
2,871,995 + +0.1
2,871,995 + +0.1
2,871,995 + -1.2
2,871,996 - -0.6
2,871,996 - +0.4
2,871,996 - -0.7
2,872,089 + +1.3
2,872,089 + -1.2
2,872,123 + +0.7
2,872,477 + -0.5
2,872,481 - +3.5
2,872,523 + +0.4
2,872,524 - -0.4
2,872,576 + -0.6
2,872,576 + +0.2
2,872,576 + -1.2

Or see this region's nucleotide sequence