Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS13300 and RR42_RS13305 are separated by 114 nucleotides RR42_RS13305 and RR42_RS13310 are separated by 531 nucleotides
RR42_RS13300: RR42_RS13300 - recombinase RecB, at 2,868,325 to 2,871,240
_RS13300
RR42_RS13305: RR42_RS13305 - hypothetical protein, at 2,871,355 to 2,871,621
_RS13305
RR42_RS13310: RR42_RS13310 - thioredoxin, at 2,872,153 to 2,872,479
_RS13310
Position (kb)
2871
2872 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2871.486 kb on - strand, within RR42_RS13305 at 2871.629 kb on - strand at 2871.687 kb on - strand at 2871.777 kb on + strand at 2871.781 kb on + strand at 2871.781 kb on + strand at 2871.784 kb on - strand at 2871.835 kb on + strand at 2871.836 kb on - strand at 2871.857 kb on + strand at 2871.900 kb on + strand at 2871.936 kb on + strand at 2871.988 kb on + strand at 2871.990 kb on + strand at 2871.990 kb on + strand at 2871.993 kb on + strand at 2871.993 kb on + strand at 2871.993 kb on + strand at 2871.993 kb on + strand at 2871.993 kb on + strand at 2871.994 kb on - strand at 2871.994 kb on - strand at 2871.995 kb on + strand at 2871.995 kb on + strand at 2871.995 kb on + strand at 2871.995 kb on + strand at 2871.995 kb on + strand at 2871.995 kb on + strand at 2871.995 kb on + strand at 2871.996 kb on - strand at 2871.996 kb on - strand at 2871.996 kb on - strand at 2872.089 kb on + strand at 2872.089 kb on + strand at 2872.123 kb on + strand at 2872.477 kb on + strand at 2872.481 kb on - strand at 2872.523 kb on + strand at 2872.524 kb on - strand at 2872.576 kb on + strand at 2872.576 kb on + strand at 2872.576 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 2,871,486 - RR42_RS13305 0.49 -0.8 2,871,629 - -1.5 2,871,687 - +0.5 2,871,777 + -0.2 2,871,781 + +0.5 2,871,781 + -0.3 2,871,784 - +0.8 2,871,835 + +0.1 2,871,836 - -0.1 2,871,857 + -0.1 2,871,900 + +0.2 2,871,936 + +0.8 2,871,988 + -0.2 2,871,990 + +0.9 2,871,990 + -0.0 2,871,993 + -1.2 2,871,993 + -1.5 2,871,993 + -0.1 2,871,993 + -2.2 2,871,993 + +0.0 2,871,994 - +0.3 2,871,994 - -1.7 2,871,995 + +0.0 2,871,995 + -0.2 2,871,995 + +0.2 2,871,995 + +0.0 2,871,995 + +0.1 2,871,995 + +0.1 2,871,995 + -1.2 2,871,996 - -0.6 2,871,996 - +0.4 2,871,996 - -0.7 2,872,089 + +1.3 2,872,089 + -1.2 2,872,123 + +0.7 2,872,477 + -0.5 2,872,481 - +3.5 2,872,523 + +0.4 2,872,524 - -0.4 2,872,576 + -0.6 2,872,576 + +0.2 2,872,576 + -1.2
Or see this region's nucleotide sequence