Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04205 and RR42_RS04210 are separated by 173 nucleotides RR42_RS04210 and RR42_RS04215 overlap by 11 nucleotides RR42_RS04215 and RR42_RS04220 are separated by 6 nucleotides
RR42_RS04205: RR42_RS04205 - glycine cleavage system regulatory protein, at 930,956 to 931,843
_RS04205
RR42_RS04210: RR42_RS04210 - membrane protein, at 932,017 to 933,306
_RS04210
RR42_RS04215: RR42_RS04215 - hypothetical protein, at 933,296 to 933,799
_RS04215
RR42_RS04220: RR42_RS04220 - membrane protein, at 933,806 to 934,666
_RS04220
Position (kb) 932
933
934 Strain fitness (log2 ratio) -2
-1
0
1 at 931.032 kb on + strand at 931.033 kb on - strand at 931.033 kb on - strand at 931.093 kb on - strand, within RR42_RS04205 at 931.093 kb on - strand, within RR42_RS04205 at 931.093 kb on - strand, within RR42_RS04205 at 931.411 kb on - strand, within RR42_RS04205 at 931.954 kb on - strand at 931.972 kb on + strand at 932.033 kb on + strand at 932.033 kb on + strand at 932.033 kb on + strand at 932.146 kb on + strand, within RR42_RS04210 at 932.146 kb on + strand, within RR42_RS04210 at 932.146 kb on + strand, within RR42_RS04210 at 932.147 kb on - strand, within RR42_RS04210 at 932.147 kb on - strand, within RR42_RS04210 at 932.148 kb on + strand, within RR42_RS04210 at 932.148 kb on + strand, within RR42_RS04210 at 932.148 kb on + strand, within RR42_RS04210 at 932.149 kb on - strand, within RR42_RS04210 at 932.239 kb on + strand, within RR42_RS04210 at 932.239 kb on + strand, within RR42_RS04210 at 932.240 kb on - strand, within RR42_RS04210 at 932.352 kb on + strand, within RR42_RS04210 at 932.581 kb on + strand, within RR42_RS04210 at 932.581 kb on + strand, within RR42_RS04210 at 932.809 kb on + strand, within RR42_RS04210 at 932.809 kb on + strand, within RR42_RS04210 at 932.923 kb on + strand, within RR42_RS04210 at 932.923 kb on + strand, within RR42_RS04210 at 932.923 kb on + strand, within RR42_RS04210 at 932.923 kb on + strand, within RR42_RS04210 at 932.924 kb on - strand, within RR42_RS04210 at 932.924 kb on - strand, within RR42_RS04210 at 932.924 kb on - strand, within RR42_RS04210 at 932.924 kb on - strand, within RR42_RS04210 at 933.019 kb on + strand, within RR42_RS04210 at 933.020 kb on - strand, within RR42_RS04210 at 933.265 kb on + strand at 933.265 kb on + strand at 933.266 kb on - strand at 933.266 kb on - strand at 933.266 kb on - strand at 933.413 kb on + strand, within RR42_RS04215 at 933.445 kb on + strand, within RR42_RS04215 at 933.446 kb on - strand, within RR42_RS04215 at 933.446 kb on - strand, within RR42_RS04215 at 933.532 kb on + strand, within RR42_RS04215 at 933.532 kb on + strand, within RR42_RS04215 at 933.532 kb on + strand, within RR42_RS04215 at 933.532 kb on + strand, within RR42_RS04215 at 933.533 kb on - strand, within RR42_RS04215 at 933.533 kb on - strand, within RR42_RS04215 at 933.533 kb on - strand, within RR42_RS04215 at 933.533 kb on - strand, within RR42_RS04215 at 933.533 kb on - strand, within RR42_RS04215 at 933.534 kb on + strand, within RR42_RS04215 at 933.534 kb on + strand, within RR42_RS04215 at 933.534 kb on + strand, within RR42_RS04215 at 933.534 kb on + strand, within RR42_RS04215 at 933.535 kb on - strand, within RR42_RS04215 at 933.535 kb on - strand, within RR42_RS04215 at 933.535 kb on - strand, within RR42_RS04215 at 933.535 kb on - strand, within RR42_RS04215 at 933.535 kb on - strand, within RR42_RS04215 at 934.185 kb on + strand, within RR42_RS04220 at 934.186 kb on - strand, within RR42_RS04220
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 931,032 + +1.0 931,033 - -0.3 931,033 - -0.0 931,093 - RR42_RS04205 0.15 -2.3 931,093 - RR42_RS04205 0.15 -2.3 931,093 - RR42_RS04205 0.15 -1.2 931,411 - RR42_RS04205 0.51 -1.3 931,954 - -0.2 931,972 + +1.7 932,033 + -0.2 932,033 + -0.3 932,033 + -2.0 932,146 + RR42_RS04210 0.10 +0.5 932,146 + RR42_RS04210 0.10 +0.7 932,146 + RR42_RS04210 0.10 -0.8 932,147 - RR42_RS04210 0.10 +0.1 932,147 - RR42_RS04210 0.10 +0.5 932,148 + RR42_RS04210 0.10 +0.2 932,148 + RR42_RS04210 0.10 -0.5 932,148 + RR42_RS04210 0.10 +1.1 932,149 - RR42_RS04210 0.10 +0.6 932,239 + RR42_RS04210 0.17 +1.2 932,239 + RR42_RS04210 0.17 -0.2 932,240 - RR42_RS04210 0.17 -0.0 932,352 + RR42_RS04210 0.26 -1.1 932,581 + RR42_RS04210 0.44 -1.4 932,581 + RR42_RS04210 0.44 -0.1 932,809 + RR42_RS04210 0.61 -0.3 932,809 + RR42_RS04210 0.61 +0.7 932,923 + RR42_RS04210 0.70 -0.7 932,923 + RR42_RS04210 0.70 -1.5 932,923 + RR42_RS04210 0.70 +0.6 932,923 + RR42_RS04210 0.70 -1.7 932,924 - RR42_RS04210 0.70 +0.3 932,924 - RR42_RS04210 0.70 -0.5 932,924 - RR42_RS04210 0.70 +0.5 932,924 - RR42_RS04210 0.70 +0.0 933,019 + RR42_RS04210 0.78 +0.2 933,020 - RR42_RS04210 0.78 -0.9 933,265 + -2.1 933,265 + -0.4 933,266 - +1.3 933,266 - +0.7 933,266 - -0.3 933,413 + RR42_RS04215 0.23 -0.5 933,445 + RR42_RS04215 0.30 +0.3 933,446 - RR42_RS04215 0.30 -0.0 933,446 - RR42_RS04215 0.30 +1.0 933,532 + RR42_RS04215 0.47 -0.4 933,532 + RR42_RS04215 0.47 +0.1 933,532 + RR42_RS04215 0.47 +0.3 933,532 + RR42_RS04215 0.47 -0.1 933,533 - RR42_RS04215 0.47 +0.3 933,533 - RR42_RS04215 0.47 +0.1 933,533 - RR42_RS04215 0.47 +0.1 933,533 - RR42_RS04215 0.47 +0.0 933,533 - RR42_RS04215 0.47 +0.1 933,534 + RR42_RS04215 0.47 -0.6 933,534 + RR42_RS04215 0.47 +0.4 933,534 + RR42_RS04215 0.47 -0.3 933,534 + RR42_RS04215 0.47 -0.9 933,535 - RR42_RS04215 0.47 +0.3 933,535 - RR42_RS04215 0.47 -0.3 933,535 - RR42_RS04215 0.47 +0.3 933,535 - RR42_RS04215 0.47 +0.5 933,535 - RR42_RS04215 0.47 -0.8 934,185 + RR42_RS04220 0.44 -1.4 934,186 - RR42_RS04220 0.44 -0.1
Or see this region's nucleotide sequence